Thhalv10009894m.g (Eutrema salsugineum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Thhalv10009894m.g T143547_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZAT1
M01167_2.00
Arabidopsis thaliana
NHRCTNN

NNAGYDN
PBM
Lambert et al.(2019)
pTH10246
0.814 0.935
ZAT4
M01168_2.00
Arabidopsis thaliana
NNHRSTN

NASYDNN
PBM
Lambert et al.(2019)
pTH11142
0.789 0.870
ZAT9
M06817_2.00
Arabidopsis thaliana
YTACTWHH

DDWAGTAR
Dap-seq
OMalley et al.(2016)
At3g60580_col_a
0.789 0.870
AZF2
M01854_2.00
Arabidopsis thaliana
NASTRNN

NNYASTN
PBM
Weirauch et al.(2014)
pTH8258
0.762 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10009894m C2H2 ZF 172 194
Thhalv10009894m C2H2 ZF 231 253

Links

Other C2H2 ZF family TFs
Other Eutrema salsugineum TFs

243 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bostr.5325s0123 Boechera stricta Bostr.5325s0123 I 0.814
ZAT1 Arabidopsis thaliana AT1G02030 D 0.814
PGSC0003DMG400024550 Solanum tuberosum PGSC0003DMG400024550 I 0.809
Solyc03g115450.1 Solanum lycopersicum Solyc03g115450.1 I 0.809
GRMZM2G170520 Zea mays GRMZM2G170520 I 0.796
Si010615m.g Setaria italica Si010615m.g I 0.796
Bo8g095300 Brassica oleracea Bo8g095300 I 0.789
Thhalv10006508m.g Eutrema salsugineum Thhalv10006508m.g I 0.789
Bra014483 Brassica rapa Bra014483 I 0.789
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.789
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.789
Bo6g077190 Brassica oleracea Bo6g077190 I 0.789
Bra007545 Brassica rapa Bra007545 I 0.789
Bra003422 Brassica rapa Bra003422 I 0.789
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.789
ZAT4 Arabidopsis thaliana AT2G45120 D 0.789
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.789
ZAT9 Arabidopsis thaliana AT3G60580 D 0.789
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.789
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.789
Bo4g104940 Brassica oleracea Bo4g104940 I 0.789
29661.m000908 Ricinus communis 29661.m000908 I 0.786
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.784
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.784
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.784
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.783
30174.m008818 Ricinus communis 30174.m008818 I 0.783
cassava19892.m1 Manihot esculenta cassava19892.m1 I 0.783
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.783
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.783
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.783
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.783
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I 0.782
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.782
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I 0.782
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.778
GSMUA_Achr11G21040_001 Musa acuminata GSMUA_Achr11G21040_001 I 0.778
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.774
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.773
cassava14164.m1 Manihot esculenta cassava14164.m1 I 0.773
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.773
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.773
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.773
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.773
Ca_23672 Cicer arietinum Ca_23672 I 0.773
OBART04G21020 Oryza barthii OBART04G21020 I 0.772
OS04G0552700 Oryza sativa OS04G0552700 I 0.772
OB04G28040 Oryza brachyantha OB04G28040 I 0.772
mgf021094m Mimulus guttatus mgf021094m I 0.772
OLONG_016061 Oryza longistaminata OLONG_016061 I 0.772
OPUNC04G18700 Oryza punctata OPUNC04G18700 I 0.772
ORGLA04G0180800 Oryza glaberrima ORGLA04G0180800 I 0.772
ONIVA04G19260 Oryza nivara ONIVA04G19260 I 0.772
OMERI04G17450 Oryza meridionalis OMERI04G17450 I 0.772
GSMUA_Achr4G26920_001 Musa acuminata GSMUA_Achr4G26920_001 I 0.772
ORUFI04G22610 Oryza rufipogon ORUFI04G22610 I 0.772
BRADI3G33100 Brachypodium distachyon BRADI3G33100 I 0.772
PGSC0003DMG400020929 Solanum tuberosum PGSC0003DMG400020929 I 0.772
GSMUA_Achr1G01550_001 Musa acuminata GSMUA_Achr1G01550_001 I 0.772
Pavir.Ab02618 Panicum virgatum Pavir.Ab02618 I 0.772
BGIOSGA016894 Oryza indica BGIOSGA016894 I 0.772
GSMUA_Achr5G08730_001 Musa acuminata GSMUA_Achr5G08730_001 I 0.770
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.768
mgf017082m Mimulus guttatus mgf017082m I 0.767
Bo3g037560 Brassica oleracea Bo3g037560 I 0.765
Bra040325 Brassica rapa Bra040325 I 0.765
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.765
Bra000372 Brassica rapa Bra000372 I 0.765
Bo4g195370 Brassica oleracea Bo4g195370 I 0.765
mgf006006m Mimulus guttatus mgf006006m I 0.764
Eucgr.K00165 Eucalyptus grandis Eucgr.K00165 I 0.764
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.764
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.764
30170.m013751 Ricinus communis 30170.m013751 I 0.764
GSMUA_Achr1G01260_001 Musa acuminata GSMUA_Achr1G01260_001 I 0.763
GSMUA_AchrUn_randomG07580_001 Musa acuminata GSMUA_AchrUn_randomG07580_001 I 0.763
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.762
TCM_022001 Theobroma cacao TCM_022001 I 0.762
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.762
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.762
TCM_007214 Theobroma cacao TCM_007214 I 0.762
Cagra.0666s0001 Capsella grandiflora Cagra.0666s0001 I 0.762
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.762
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.762
Carubv10024141m.g Capsella rubella Carubv10024141m.g I 0.762
TCM_034720 Theobroma cacao TCM_034720 I 0.762
Gorai.006G104800 Gossypium raimondii Gorai.006G104800 I 0.762
Ca_01586 Cicer arietinum Ca_01586 I 0.762
gw1.254.15.1 Physcomitrella patens gw1.254.15.1 I 0.762
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.762
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.762
28637.m000203 Ricinus communis 28637.m000203 I 0.762
cassava35212.m1 Manihot esculenta cassava35212.m1 I 0.762
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.762
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.762
cassava8924.m1 Manihot esculenta cassava8924.m1 I 0.762
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.762
28152.m000908 Ricinus communis 28152.m000908 I 0.762
Pm021284 Prunus mume Pm021284 I 0.762
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.762
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.762
TRIUR3_29692 Triticum urartu TRIUR3_29692 I 0.762
gene18205-v1.0-hybrid Fragaria vesca gene18205-v1.0-hybrid I 0.762
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.762
Ca_05641 Cicer arietinum Ca_05641 I 0.762
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.762
Pm005390 Prunus mume Pm005390 I 0.762
Ca_18364 Cicer arietinum Ca_18364 I 0.762
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.762
ORGLA02G0229600 Oryza glaberrima ORGLA02G0229600 I 0.762
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.762
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.762
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.762
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.762
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.762
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.762
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.762
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.762
MDP0000762756 Malus domestica MDP0000762756 I 0.762
MDP0000573176 Malus domestica MDP0000573176 I 0.762
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.762
GSMUA_Achr5G15450_001 Musa acuminata GSMUA_Achr5G15450_001 I 0.762
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.762
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.762
PK10188.1 Cannabis sativa PK10188.1 I 0.762
Bo4g030570 Brassica oleracea Bo4g030570 I 0.762
Bo4g186920 Brassica oleracea Bo4g186920 I 0.762
Bo1g113530 Brassica oleracea Bo1g113530 I 0.762
BGIOSGA008755 Oryza indica BGIOSGA008755 I 0.762
AZF2 Arabidopsis thaliana AT3G19580 D 0.762
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.762
Bo5g113850 Brassica oleracea Bo5g113850 I 0.762
Bra005197 Brassica rapa Bra005197 I 0.762
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.762
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.762
Bra038219 Brassica rapa Bra038219 I 0.762
Bra022436 Brassica rapa Bra022436 I 0.762
Bra017188 Brassica rapa Bra017188 I 0.762
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.762
MDP0000319225 Malus domestica MDP0000319225 I 0.762
ORUFI02G28150 Oryza rufipogon ORUFI02G28150 I 0.762
OS02G0659500 Oryza sativa OS02G0659500 I 0.762
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.762
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.762
ONIVA02G29150 Oryza nivara ONIVA02G29150 I 0.762
Gorai.012G006900 Gossypium raimondii Gorai.012G006900 I 0.762
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.762
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.762
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.762
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.762
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.762
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.762
OMERI02G26030 Oryza meridionalis OMERI02G26030 I 0.762
Lus10015888.g Linum usitatissimum Lus10015888.g I 0.762
OGLUM02G27190 Oryza glumaepatula OGLUM02G27190 I 0.762
MDP0000198015 Malus domestica MDP0000198015 I 0.762
MTR_7g100100 Medicago truncatula MTR_7g100100 I 0.762
OBART02G26700 Oryza barthii OBART02G26700 I 0.762
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.762
MDP0000257423 Malus domestica MDP0000257423 I 0.761
orange1.1g031966m.g Citrus sinensis orange1.1g031966m.g I 0.761
Gorai.006G176100 Gossypium raimondii Gorai.006G176100 I 0.761
Eucgr.G02910 Eucalyptus grandis Eucgr.G02910 I 0.761
Gorai.011G254200 Gossypium raimondii Gorai.011G254200 I 0.761
Gorai.011G254300 Gossypium raimondii Gorai.011G254300 I 0.761
Gorai.006G176000 Gossypium raimondii Gorai.006G176000 I 0.761
gene26659-v1.0-hybrid Fragaria vesca gene26659-v1.0-hybrid I 0.761
evm.TU.contig_30912.1 Carica papaya evm.TU.contig_30912.1 I 0.761
gene18204-v1.0-hybrid Fragaria vesca gene18204-v1.0-hybrid I 0.761
SapurV1A.0038s0750 Salix purpurea SapurV1A.0038s0750 I 0.761
SapurV1A.0095s0590 Salix purpurea SapurV1A.0095s0590 I 0.761
Lus10030330.g Linum usitatissimum Lus10030330.g I 0.761
Thhalv10017303m.g Eutrema salsugineum Thhalv10017303m.g I 0.761
Lus10024428.g Linum usitatissimum Lus10024428.g I 0.761
Gorai.013G023300 Gossypium raimondii Gorai.013G023300 I 0.761
MDP0000137826 Malus domestica MDP0000137826 I 0.761
Ciclev10013311m.g Citrus clementina Ciclev10013311m.g I 0.761
chr5.CM0180.20.nc Lotus japonicus chr5.CM0180.20.nc I 0.761
Solyc05g054650.1 Solanum lycopersicum Solyc05g054650.1 I 0.761
Bostr.23794s0343 Boechera stricta Bostr.23794s0343 I 0.761
GLYMA03G33060 Glycine max GLYMA03G33060 I 0.761
MTR_7g023560 Medicago truncatula MTR_7g023560 I 0.761
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.761
PGSC0003DMG400023518 Solanum tuberosum PGSC0003DMG400023518 I 0.761
PGSC0003DMG400023547 Solanum tuberosum PGSC0003DMG400023547 I 0.761
POPTR_0010s21650 Populus trichocarpa POPTR_0010s21650 I 0.761
POPTR_0008s05110 Populus trichocarpa POPTR_0008s05110 I 0.761
GLYMA10G43630 Glycine max GLYMA10G43630 I 0.761
GLYMA03G33050 Glycine max GLYMA03G33050 I 0.761
GLYMA03G33070 Glycine max GLYMA03G33070 I 0.761
GLYMA10G05210 Glycine max GLYMA10G05210 I 0.761
GLYMA19G35770 Glycine max GLYMA19G35770 I 0.761
GLYMA19G35740 Glycine max GLYMA19G35740 I 0.761
GLYMA18G52410 Glycine max GLYMA18G52410 I 0.761
GLYMA13G19570 Glycine max GLYMA13G19570 I 0.761
GLYMA20G23180 Glycine max GLYMA20G23180 I 0.761
GSMUA_Achr10G03700_001 Musa acuminata GSMUA_Achr10G03700_001 I 0.761
GSMUA_Achr6G15360_001 Musa acuminata GSMUA_Achr6G15360_001 I 0.761
GSMUA_Achr5G29140_001 Musa acuminata GSMUA_Achr5G29140_001 I 0.761
GSMUA_Achr10G13540_001 Musa acuminata GSMUA_Achr10G13540_001 I 0.761
PRUPE_ppa011762mg Prunus persica PRUPE_ppa011762mg I 0.761
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.761
Cla004091 Citrullus lanatus Cla004091 I 0.761
PRUPE_ppa022066mg Prunus persica PRUPE_ppa022066mg I 0.761
VIT_13s0019g00480 Vitis vinifera VIT_13s0019g00480 I 0.761
Cucsa.165460 Cucumis sativus Cucsa.165460 I 0.761
fgenesh1_pm.C_scaffold_1003183 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003183 I 0.761
Pm002762 Prunus mume Pm002762 I 0.761
29585.m000611 Ricinus communis 29585.m000611 I 0.761
cassava9455.m1 Manihot esculenta cassava9455.m1 I 0.761
Pm018761 Prunus mume Pm018761 I 0.761
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.761
mgf023249m Mimulus guttatus mgf023249m I 0.761
Aquca_027_00274 Aquilegia coerulea Aquca_027_00274 I 0.761
Solyc05g054660.1 Solanum lycopersicum Solyc05g054660.1 I 0.761
GLYMA02G10490 Glycine max GLYMA02G10490 I 0.761
Aquca_010_00703 Aquilegia coerulea Aquca_010_00703 I 0.761
fgenesh2_kg.4__1796__AT2G37430.1 Arabidopsis lyrata fgenesh2_kg.4__1796__AT2G37430.1 I 0.761
VIT_06s0004g04180 Vitis vinifera VIT_06s0004g04180 I 0.761
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.761
PGSC0003DMG400026020 Solanum tuberosum PGSC0003DMG400026020 I 0.759
Solyc01g090840.2 Solanum lycopersicum Solyc01g090840.2 I 0.759
GRMZM5G804618 Zea mays GRMZM5G804618 I 0.758
BGIOSGA000523 Oryza indica BGIOSGA000523 I 0.758
OGLUM01G40470 Oryza glumaepatula OGLUM01G40470 I 0.758
ORUFI01G40000 Oryza rufipogon ORUFI01G40000 I 0.758
OS01G0838600 Oryza sativa OS01G0838600 I 0.758
TRAES3BF117500110CFD_g Triticum aestivum TRAES3BF117500110CFD_g I 0.758
ORGLA01G0304300 Oryza glaberrima ORGLA01G0304300 I 0.758
ONIVA01G41600 Oryza nivara ONIVA01G41600 I 0.758
LPERR01G31460 Leersia perrieri LPERR01G31460 I 0.758
OMERI01G33680 Oryza meridionalis OMERI01G33680 I 0.758
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I 0.756
OS12G0583700 Oryza sativa OS12G0583700 I 0.756
Cla018516 Citrullus lanatus Cla018516 I 0.756
Eucgr.A01231 Eucalyptus grandis Eucgr.A01231 I 0.756
Cucsa.065930 Cucumis sativus Cucsa.065930 I 0.756
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.756
Si023013m.g Setaria italica Si023013m.g I 0.756
MLOC_54674 Hordeum vulgare MLOC_54674 I 0.756
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.756
PGSC0003DMG400030311 Solanum tuberosum PGSC0003DMG400030311 I 0.756
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.756