Thhalv10010068m.g (Eutrema salsugineum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Thhalv10010068m.g T143549_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
REF6
M08081_2.00 		Arabidopsis thaliana
DNCTCTGTTTY
RAAACAGAGNH		 ChIP-seq
Mathelier et al.(2014)
MA1415.1 		0.800 0.922
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10010068m C2H2 ZF 1247 1270
Thhalv10010068m C2H2 ZF 1271 1294
Thhalv10010068m C2H2 ZF 1300 1324
Thhalv10010068m C2H2 ZF 1330 1356

Links

Other C2H2 ZF family TFs
Other Eutrema salsugineum TFs

8 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra018060 Brassica rapa Bra018060 I 0.815
scaffold_501791.1 Arabidopsis lyrata scaffold_501791.1 I 0.805
REF6 Arabidopsis lyrata fgenesh2_kg.5__1196__AT3G48430.1 I 0.805
Carubv10016578m.g Capsella rubella Carubv10016578m.g I 0.804
Cagra.0807s0010 Capsella grandiflora Cagra.0807s0010 I 0.804
Bo8g076910 Brassica oleracea Bo8g076910 I 0.803
Thhalv10010066m.g Eutrema salsugineum Thhalv10010066m.g I 0.802
REF6 Arabidopsis thaliana AT3G48430 D 0.800