CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10013882m.g
(
Eutrema salsugineum
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Thhalv10013882m.g
T143557_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
STOP2
M06820_2.00
Arabidopsis thaliana
YAGATAHMACCTNHNHND
HNDNDNAGGTKDTATCTR
Dap-seq
OMalley et al.(2016)
At5g22890_col_a
0.827
0.977
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10013882m
C2H2 ZF
299
321
YMCRRCSVKHFSVLSDLRTHEKH
Thhalv10013882m
C2H2 ZF
322
351
CGDIKWICSCGTRFSRKDKLMSHVSLFLGH
Links
Other
C2H2 ZF
family TFs
Other
Eutrema salsugineum
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy