Thhalv10016023m.g (Eutrema salsugineum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Thhalv10016023m.g T143567_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IDD1
M06824_2.00 		Arabidopsis thaliana
DNTTTTGTCKTTTWBYD
HRVWAAAMGACAAAANH		 Dap-seq
OMalley et al.(2016)
At5g66730_colamp_a 		0.763 0.884
IDD1
M06825_2.00 		Arabidopsis thaliana
WDTTTTGTCKTTTWNYD
HRNWAAAMGACAAAAHW		 Dap-seq
OMalley et al.(2016)
At5g66730_col 		0.763 0.884
JKD
M06818_2.00 		Arabidopsis thaliana
HHNWWTTTTGTCKTTTWBYD
HRVWAAAMGACAAAAWWNDD		 Dap-seq
OMalley et al.(2016)
JKD_col_a 		0.759 0.837
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10016023m C2H2 ZF 115 136
Thhalv10016023m C2H2 ZF 135 161

Links

Other C2H2 ZF family TFs
Other Eutrema salsugineum TFs

280 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10036116.g Linum usitatissimum Lus10036116.g I 0.797
Bra033840 Brassica rapa Bra033840 I 0.797
Bo3g129830 Brassica oleracea Bo3g129830 I 0.797
scaffold_501386.1 Arabidopsis lyrata scaffold_501386.1 I 0.797
mgf001929m Mimulus guttatus mgf001929m I 0.797
Bostr.18473s0395 Boechera stricta Bostr.18473s0395 I 0.797
GLYMA12G07510 Glycine max GLYMA12G07510 I 0.797
Bo2g167740 Brassica oleracea Bo2g167740 I 0.797
Lus10007409.g Linum usitatissimum Lus10007409.g I 0.797
IDD9 Arabidopsis thaliana AT3G45260 D 0.797
Bo1g065210 Brassica oleracea Bo1g065210 I 0.797
Thhalv10002526m.g Eutrema salsugineum Thhalv10002526m.g I 0.797
Eucgr.J00939 Eucalyptus grandis Eucgr.J00939 I 0.792
Cla005124 Citrullus lanatus Cla005124 I 0.792
gene04812-v1.0-hybrid Fragaria vesca gene04812-v1.0-hybrid I 0.792
PGSC0003DMG400008110 Solanum tuberosum PGSC0003DMG400008110 I 0.792
Gorai.001G131000 Gossypium raimondii Gorai.001G131000 I 0.792
Ciclev10028294m.g Citrus clementina Ciclev10028294m.g I 0.792
Carubv10017213m.g Capsella rubella Carubv10017213m.g I 0.792
Ca_14587 Cicer arietinum Ca_14587 I 0.792
TCM_041053 Theobroma cacao TCM_041053 I 0.792
Cagra.28200s0002 Capsella grandiflora Cagra.28200s0002 I 0.792
Solyc11g069240.1 Solanum lycopersicum Solyc11g069240.1 I 0.792
VIT_06s0004g03070 Vitis vinifera VIT_06s0004g03070 I 0.792
Cucsa.222420 Cucumis sativus Cucsa.222420 I 0.792
Gorai.004G076800 Gossypium raimondii Gorai.004G076800 I 0.792
cassava832.valid.m1 Manihot esculenta cassava832.valid.m1 I 0.792
orange1.1g011146m.g Citrus sinensis orange1.1g011146m.g I 0.792
cassava6007.valid.m1 Manihot esculenta cassava6007.valid.m1 I 0.792
29643.m000323 Ricinus communis 29643.m000323 I 0.792
MTR_4g059870 Medicago truncatula MTR_4g059870 I 0.792
Gorai.006G120000 Gossypium raimondii Gorai.006G120000 I 0.792
Eucgr.B02487 Eucalyptus grandis Eucgr.B02487 I 0.786
MTR_2g093960 Medicago truncatula MTR_2g093960 I 0.778
Bra038293 Brassica rapa Bra038293 I 0.774
30128.m008580 Ricinus communis 30128.m008580 I 0.774
GLYMA11G15950 Glycine max GLYMA11G15950 I 0.774
GLYMA12G29370 Glycine max GLYMA12G29370 I 0.773
VIT_04s0023g01430 Vitis vinifera VIT_04s0023g01430 I 0.768
TRAES3BF042100060CFD_g Triticum aestivum TRAES3BF042100060CFD_g I 0.768
TRIUR3_35215 Triticum urartu TRIUR3_35215 I 0.768
Traes_6DL_244C908B5 Triticum aestivum Traes_6DL_244C908B5 I 0.768
Traes_2DL_540050272 Triticum aestivum Traes_2DL_540050272 I 0.768
Ca_03678 Cicer arietinum Ca_03678 I 0.768
Si009633m.g Setaria italica Si009633m.g I 0.768
PGSC0003DMG400003372 Solanum tuberosum PGSC0003DMG400003372 I 0.768
PGSC0003DMG400012684 Solanum tuberosum PGSC0003DMG400012684 I 0.768
POPTR_0005s12710 Populus trichocarpa POPTR_0005s12710 I 0.768
OS04G0566400 Oryza sativa OS04G0566400 I 0.768
OS02G0672100 Oryza sativa OS02G0672100 I 0.768
ORUFI04G23520 Oryza rufipogon ORUFI04G23520 I 0.768
OS01G0572300 Oryza sativa OS01G0572300 I 0.768
XM_002310763.1 Populus trichocarpa POPTR_0007s12520 I 0.768
PRUPE_ppa004299mg Prunus persica PRUPE_ppa004299mg I 0.768
Solyc06g075250.2 Solanum lycopersicum Solyc06g075250.2 I 0.768
TCM_000429 Theobroma cacao TCM_000429 I 0.768
Traes_2AL_7ABA7B7C8 Triticum aestivum Traes_2AL_7ABA7B7C8 I 0.768
Si001504m.g Setaria italica Si001504m.g I 0.768
Si001287m.g Setaria italica Si001287m.g I 0.768
Sb03g025790 Sorghum bicolor Sb03g025790 I 0.768
Sb06g025550 Sorghum bicolor Sb06g025550 I 0.768
Traes_2BL_58A855C7B Triticum aestivum Traes_2BL_58A855C7B I 0.768
mgf006239m Mimulus guttatus mgf006239m I 0.768
Lus10041723.g Linum usitatissimum Lus10041723.g I 0.768
MDP0000137126 Malus domestica MDP0000137126 I 0.768
Pavir.Ga01013 Panicum virgatum Pavir.Ga01013 I 0.768
Gorai.007G205300 Gossypium raimondii Gorai.007G205300 I 0.768
Gorai.003G016300 Gossypium raimondii Gorai.003G016300 I 0.768
gene29562-v1.0-hybrid Fragaria vesca gene29562-v1.0-hybrid I 0.768
Gorai.003G016200 Gossypium raimondii Gorai.003G016200 I 0.768
Pavir.Gb01057 Panicum virgatum Pavir.Gb01057 I 0.768
SapurV1A.0255s0120 Salix purpurea SapurV1A.0255s0120 I 0.768
PK25985.1 Cannabis sativa PK25985.1 I 0.768
LjSGA_017927.1 Lotus japonicus LjSGA_017927.1 I 0.768
PK02322.1 Cannabis sativa PK02322.1 I 0.768
Thhalv10010353m.g Eutrema salsugineum Thhalv10010353m.g I 0.768
SapurV1A.0817s0050 Salix purpurea SapurV1A.0817s0050 I 0.768
SapurV1A.3093s0010 Salix purpurea SapurV1A.3093s0010 I 0.768
evm.TU.supercontig_158.1 Carica papaya evm.TU.supercontig_158.1 I 0.768
Eucgr.I02463 Eucalyptus grandis Eucgr.I02463 I 0.768
Cucsa.163800 Cucumis sativus Cucsa.163800 I 0.768
Cucsa.190800 Cucumis sativus Cucsa.190800 I 0.768
cassava42858.valid.m1 Manihot esculenta cassava42858.valid.m1 I 0.768
cassava29681.valid.m1 Manihot esculenta cassava29681.valid.m1 I 0.768
Cla015825 Citrullus lanatus Cla015825 I 0.768
Pm026593 Prunus mume Pm026593 I 0.768
mgf003280m Mimulus guttatus mgf003280m I 0.768
ORUFI02G28900 Oryza rufipogon ORUFI02G28900 I 0.768
Carubv10001008m.g Capsella rubella Carubv10001008m.g I 0.768
Carubv10017209m.g Capsella rubella Carubv10017209m.g I 0.768
Cagra.0926s0031 Capsella grandiflora Cagra.0926s0031 I 0.768
Cagra.0635s0013 Capsella grandiflora Cagra.0635s0013 I 0.768
Bostr.2983s0191 Boechera stricta Bostr.2983s0191 I 0.768
Bostr.6864s0177 Boechera stricta Bostr.6864s0177 I 0.768
Cla014416 Citrullus lanatus Cla014416 I 0.768
Traes_3AL_35CA14632 Triticum aestivum Traes_3AL_35CA14632 I 0.768
GSMUA_Achr5G06450_001 Musa acuminata GSMUA_Achr5G06450_001 I 0.768
LPERR01G17290 Leersia perrieri LPERR01G17290 I 0.768
GSMUA_Achr4G04310_001 Musa acuminata GSMUA_Achr4G04310_001 I 0.768
GSMUA_Achr1G07110_001 Musa acuminata GSMUA_Achr1G07110_001 I 0.768
GSMUA_Achr10G21260_001 Musa acuminata GSMUA_Achr10G21260_001 I 0.768
GSMUA_Achr1G02080_001 Musa acuminata GSMUA_Achr1G02080_001 I 0.768
LPERR02G22320 Leersia perrieri LPERR02G22320 I 0.768
MLOC_56120 Hordeum vulgare MLOC_56120 I 0.768
OGLUM01G23770 Oryza glumaepatula OGLUM01G23770 I 0.768
OGLUM02G28000 Oryza glumaepatula OGLUM02G28000 I 0.768
OBART04G21910 Oryza barthii OBART04G21910 I 0.768
OBART01G20150 Oryza barthii OBART01G20150 I 0.768
MLOC_57518 Hordeum vulgare MLOC_57518 I 0.768
OB02G34800 Oryza brachyantha OB02G34800 I 0.768
GRMZM5G884137 Zea mays GRMZM5G884137 I 0.768
GRMZM2G177693 Zea mays GRMZM2G177693 I 0.768
F775_28900 Aegilops tauschii F775_28900 I 0.768
AtIDD12 Arabidopsis lyrata fgenesh1_pg.C_scaffold_6003159 I 0.768
BRADI5G18530 Brachypodium distachyon BRADI5G18530 I 0.768
BRADI2G41550 Brachypodium distachyon BRADI2G41550 I 0.768
BGIOSGA008789 Oryza indica BGIOSGA008789 I 0.768
BGIOSGA016934 Oryza indica BGIOSGA016934 I 0.768
AtIDD2 Arabidopsis lyrata fgenesh2_kg.5__1410__AT3G50700.1 I 0.768
GLYMA01G38290 Glycine max GLYMA01G38290 I 0.768
GRMZM2G027333 Zea mays GRMZM2G027333 I 0.768
GRMZM2G129261 Zea mays GRMZM2G129261 I 0.768
GLYMA20G37900 Glycine max GLYMA20G37900 I 0.768
GLYMA17G34601 Glycine max GLYMA17G34601 I 0.768
GLYMA10G29390 Glycine max GLYMA10G29390 I 0.768
OGLUM04G21940 Oryza glumaepatula OGLUM04G21940 I 0.768
GSMUA_Achr10G07180_001 Musa acuminata GSMUA_Achr10G07180_001 I 0.768
ORUFI01G22710 Oryza rufipogon ORUFI01G22710 I 0.768
ONIVA02G30280 Oryza nivara ONIVA02G30280 I 0.768
OMERI02G26740 Oryza meridionalis OMERI02G26740 I 0.768
ORGLA02G0236400 Oryza glaberrima ORGLA02G0236400 I 0.768
ONIVA04G20460 Oryza nivara ONIVA04G20460 I 0.768
ONIVA01G22710 Oryza nivara ONIVA01G22710 I 0.768
OPUNC03G06880 Oryza punctata OPUNC03G06880 I 0.768
OMERI01G18610 Oryza meridionalis OMERI01G18610 I 0.768
OPUNC01G20510 Oryza punctata OPUNC01G20510 I 0.768
OPUNC04G19640 Oryza punctata OPUNC04G19640 I 0.768
OPUNC02G25110 Oryza punctata OPUNC02G25110 I 0.768
ONIVA02G20290 Oryza nivara ONIVA02G20290 I 0.767
Pavir.Aa01904 Panicum virgatum Pavir.Aa01904 I 0.767
F775_04344 Aegilops tauschii F775_04344 I 0.767
Sb04g021440 Sorghum bicolor Sb04g021440 I 0.767
OPUNC02G16560 Oryza punctata OPUNC02G16560 I 0.767
Pavir.Ab01787 Panicum virgatum Pavir.Ab01787 I 0.767
LPERR02G14730 Leersia perrieri LPERR02G14730 I 0.767
BRADI3G44520 Brachypodium distachyon BRADI3G44520 I 0.767
ORGLA02G0157900 Oryza glaberrima ORGLA02G0157900 I 0.767
OB02G26130 Oryza brachyantha OB02G26130 I 0.767
OGLUM02G18620 Oryza glumaepatula OGLUM02G18620 I 0.767
OMERI02G18510 Oryza meridionalis OMERI02G18510 I 0.767
BGIOSGA006371 Oryza indica BGIOSGA006371 I 0.767
Si019690m.g Setaria italica Si019690m.g I 0.767
GRMZM2G320287 Zea mays GRMZM2G320287 I 0.767
OLONG_013811 Oryza longistaminata OLONG_013811 I 0.767
ORUFI02G19290 Oryza rufipogon ORUFI02G19290 I 0.767
OBART02G18320 Oryza barthii OBART02G18320 I 0.767
TRIUR3_32694 Triticum urartu TRIUR3_32694 I 0.767
Traes_4AS_F7A905B43 Triticum aestivum Traes_4AS_F7A905B43 I 0.767
Traes_4DL_DF1F43E16 Triticum aestivum Traes_4DL_DF1F43E16 I 0.767
OS02G0518500 Oryza sativa OS02G0518500 I 0.767
PRUPE_ppa005468mg Prunus persica PRUPE_ppa005468mg I 0.764
Pm030100 Prunus mume Pm030100 I 0.764
Cucsa.084240 Cucumis sativus Cucsa.084240 I 0.764
PRUPE_ppa003849mg Prunus persica PRUPE_ppa003849mg I 0.764
GSMUA_Achr2G08910_001 Musa acuminata GSMUA_Achr2G08910_001 I 0.764
gene20264-v1.0-hybrid Fragaria vesca gene20264-v1.0-hybrid I 0.764
Cucsa.306990 Cucumis sativus Cucsa.306990 I 0.764
MDP0000319344 Malus domestica MDP0000319344 I 0.764
PK06347.1 Cannabis sativa PK06347.1 I 0.764
Pm020252 Prunus mume Pm020252 I 0.764
Ca_07799 Cicer arietinum Ca_07799 I 0.764
Cla018101 Citrullus lanatus Cla018101 I 0.764
Cla015029 Citrullus lanatus Cla015029 I 0.764
Carubv10026275m.g Capsella rubella Carubv10026275m.g I 0.763
Solyc08g063040.2 Solanum lycopersicum Solyc08g063040.2 I 0.763
Bostr.0568s0090 Boechera stricta Bostr.0568s0090 I 0.763
POPTR_0006s24410 Populus trichocarpa POPTR_0006s24410 I 0.763
Gorai.010G099600 Gossypium raimondii Gorai.010G099600 I 0.763
SapurV1A.0086s0480 Salix purpurea SapurV1A.0086s0480 I 0.763
Bra037151 Brassica rapa Bra037151 I 0.763
Thhalv10004063m.g Eutrema salsugineum Thhalv10004063m.g I 0.763
IDD1 Arabidopsis thaliana AT5G66730 D 0.763
PK15161.1 Cannabis sativa PK15161.1 I 0.763
mgf017113m Mimulus guttatus mgf017113m I 0.763
BRADI3G51090 Brachypodium distachyon BRADI3G51090 I 0.763
Eucgr.J02851 Eucalyptus grandis Eucgr.J02851 I 0.763
GLYMA03G39650 Glycine max GLYMA03G39650 I 0.763
PGSC0003DMG400008205 Solanum tuberosum PGSC0003DMG400008205 I 0.763
gene02702-v1.0-hybrid Fragaria vesca gene02702-v1.0-hybrid I 0.763
fgenesh2_kg.8__2743__AT5G66730.1 Arabidopsis lyrata fgenesh2_kg.8__2743__AT5G66730.1 I 0.763
Eucgr.B02626 Eucalyptus grandis Eucgr.B02626 I 0.763
Cagra.2007s0026 Capsella grandiflora Cagra.2007s0026 I 0.763
Cucsa.201280 Cucumis sativus Cucsa.201280 I 0.763
VIT_04s0008g01160 Vitis vinifera VIT_04s0008g01160 I 0.763
MLOC_60958 Hordeum vulgare MLOC_60958 I 0.763
Pm005517 Prunus mume Pm005517 I 0.763
PRUPE_ppa004359mg Prunus persica PRUPE_ppa004359mg I 0.763
TCM_037300 Theobroma cacao TCM_037300 I 0.763
LPERR04G17920 Leersia perrieri LPERR04G17920 I 0.763
Cla014763 Citrullus lanatus Cla014763 I 0.763
MTR_1g016010 Medicago truncatula MTR_1g016010 I 0.763
GSMUA_Achr7G13540_001 Musa acuminata GSMUA_Achr7G13540_001 I 0.763
29794.m003304 Ricinus communis 29794.m003304 I 0.763
Ciclev10007837m.g Citrus clementina Ciclev10007837m.g I 0.762
orange1.1g008017m.g Citrus sinensis orange1.1g008017m.g I 0.762
Traes_4BL_38E55D7B4 Triticum aestivum Traes_4BL_38E55D7B4 I 0.762
GSMUA_AchrUn_randomG09270_001 Musa acuminata GSMUA_AchrUn_randomG09270_001 I 0.762
JKD Vitis vinifera VIT_08s0040g02100 I 0.759
orange1.1g011334m.g Citrus sinensis orange1.1g011334m.g I 0.759
orange1.1g011807m.g Citrus sinensis orange1.1g011807m.g I 0.759
Ca_17124 Cicer arietinum Ca_17124 I 0.759
Bra009549 Brassica rapa Bra009549 I 0.759
MDP0000122321 Malus domestica MDP0000122321 I 0.759
MDP0000688613 Malus domestica MDP0000688613 I 0.759
MDP0000243664 Malus domestica MDP0000243664 I 0.759
Bra018535 Brassica rapa Bra018535 I 0.759
MDP0000826293 Malus domestica MDP0000826293 I 0.759
MDP0000480293 Malus domestica MDP0000480293 I 0.759
VIT_00s0179g00170 Vitis vinifera VIT_00s0179g00170 I 0.759
Solyc09g007550.2 Solanum lycopersicum Solyc09g007550.2 I 0.759
Solyc10g084180.1 Solanum lycopersicum Solyc10g084180.1 I 0.759
TCM_004271 Theobroma cacao TCM_004271 I 0.759
Thhalv10028701m.g Eutrema salsugineum Thhalv10028701m.g I 0.759
PK18288.1 Cannabis sativa PK18288.1 I 0.759
JKD Arabidopsis thaliana AT5G03150 D 0.759
LjT03L03.50.nd Lotus japonicus LjT03L03.50.nd I 0.759
AMTR_s00007p00061550 Amborella trichopoda AMTR_s00007p00061550 I 0.759
chr1.CM0322.120.nc Lotus japonicus chr1.CM0322.120.nc I 0.759
Thhalv10013267m.g Eutrema salsugineum Thhalv10013267m.g I 0.759
TCM_022127 Theobroma cacao TCM_022127 I 0.759
SapurV1A.0112s0130 Salix purpurea SapurV1A.0112s0130 I 0.759
Lus10026497.g Linum usitatissimum Lus10026497.g I 0.759
SapurV1A.0006s1510 Salix purpurea SapurV1A.0006s1510 I 0.759
Bo9g183170 Brassica oleracea Bo9g183170 I 0.759
SapurV1A.0209s0070 Salix purpurea SapurV1A.0209s0070 I 0.759
Bo2g100660 Brassica oleracea Bo2g100660 I 0.759
AMTR_s00002p00270520 Amborella trichopoda AMTR_s00002p00270520 I 0.759
SapurV1A.5138s0010 Salix purpurea SapurV1A.5138s0010 I 0.759
Bo2g003880 Brassica oleracea Bo2g003880 I 0.759
Bra005741 Brassica rapa Bra005741 I 0.759
Cla018558 Citrullus lanatus Cla018558 I 0.759
PGSC0003DMG400010478 Solanum tuberosum PGSC0003DMG400010478 I 0.759
GLYMA13G20231 Glycine max GLYMA13G20231 I 0.759
Carubv10000736m.g Capsella rubella Carubv10000736m.g I 0.759
PRUPE_ppa004548mg Prunus persica PRUPE_ppa004548mg I 0.759
Ciclev10011592m.g Citrus clementina Ciclev10011592m.g I 0.759
Eucgr.A01159 Eucalyptus grandis Eucgr.A01159 I 0.759
GLYMA10G05880 Glycine max GLYMA10G05880 I 0.759
Ciclev10019959m.g Citrus clementina Ciclev10019959m.g I 0.759
Cagra.1597s0004 Capsella grandiflora Cagra.1597s0004 I 0.759
GLYMA19G36430 Glycine max GLYMA19G36430 I 0.759
mgf003691m Mimulus guttatus mgf003691m I 0.759
Aquca_049_00144 Aquilegia coerulea Aquca_049_00144 I 0.759
Aquca_027_00051 Aquilegia coerulea Aquca_027_00051 I 0.759
POPTR_0016s08990 Populus trichocarpa POPTR_0016s08990 I 0.759
Bostr.2128s0141 Boechera stricta Bostr.2128s0141 I 0.759
POPTR_0002s04880 Populus trichocarpa POPTR_0002s04880 I 0.759
POPTR_0006s13130 Populus trichocarpa POPTR_0006s13130 I 0.759
Lus10019927.g Linum usitatissimum Lus10019927.g I 0.759
GLYMA10G03541 Glycine max GLYMA10G03541 I 0.759
JKD Arabidopsis lyrata fgenesh2_kg.6__219__AT5G03150.1 I 0.759
29883.m001956 Ricinus communis 29883.m001956 I 0.759
Gorai.009G418600 Gossypium raimondii Gorai.009G418600 I 0.759
PGSC0003DMG400001747 Solanum tuberosum PGSC0003DMG400001747 I 0.759
Pm001002 Prunus mume Pm001002 I 0.759
mgf023281m Mimulus guttatus mgf023281m I 0.759
Gorai.007G139800 Gossypium raimondii Gorai.007G139800 I 0.759
Gorai.006G167600 Gossypium raimondii Gorai.006G167600 I 0.759
cassava26767.m1 Manihot esculenta cassava26767.m1 I 0.759
gene09703-v1.0-hybrid Fragaria vesca gene09703-v1.0-hybrid I 0.759
cassava20362.m1 Manihot esculenta cassava20362.m1 I 0.759
GLYMA03G31390 Glycine max GLYMA03G31390 I 0.759
cassava24590.valid.m1 Manihot esculenta cassava24590.valid.m1 I 0.759
cassava20187.m1 Manihot esculenta cassava20187.m1 I 0.759
evm.TU.supercontig_45.59 Carica papaya evm.TU.supercontig_45.59 I 0.759
30078.m002347 Ricinus communis 30078.m002347 I 0.759
evm.TU.supercontig_52.117 Carica papaya evm.TU.supercontig_52.117 I 0.759
Gorai.008G002200 Gossypium raimondii Gorai.008G002200 I 0.759
GLYMA19G34220 Glycine max GLYMA19G34220 I 0.758
GSMUA_Achr2G16690_001 Musa acuminata GSMUA_Achr2G16690_001 I 0.757