Thhalv10028723m.g (Eutrema salsugineum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Thhalv10028723m.g T143584_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YY1
M01443_2.00 		Arabidopsis thaliana
NNNVCWYNN
NNRWGBNNN		 PBM
Najafabadi et al.(2015a)
pTH11160 		0.816 0.948
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10028723m C2H2 ZF 79 103
Thhalv10028723m C2H2 ZF 108 132
Thhalv10028723m C2H2 ZF 138 162
Thhalv10028723m C2H2 ZF 168 193
Thhalv10028723m C2H2 ZF 231 256

Links

Other C2H2 ZF family TFs
Other Eutrema salsugineum TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.3877s0062 Boechera stricta Bostr.3877s0062 I 0.825
fgenesh2_kg.6__2821__AT4G06634.1 Arabidopsis lyrata fgenesh2_kg.6__2821__AT4G06634.1 I 0.825
Bra035726 Brassica rapa Bra035726 I 0.825
Bo00829s040 Brassica oleracea Bo00829s040 I 0.825
Bra029186 Brassica rapa Bra029186 I 0.824
Bo3g023850 Brassica oleracea Bo3g023850 I 0.824
YY1 Arabidopsis thaliana AT4G06634 D 0.816
Cagra.2657s0002 Capsella grandiflora Cagra.2657s0002 I 0.812
Carubv10001157m.g Capsella rubella Carubv10001157m.g I 0.812
Ca_00041 Cicer arietinum Ca_00041 N 0.761