CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LCUP006861
(
Lucilia cuprina
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
LCUP006861
T144253_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
sna
M03670_2.00
Drosophila melanogaster
TRCACCTGTYVB
VBRACAGGTGYA
SELEX
Nitta et al.(2015)
sna_1
0.797
0.921
sna
M05862_2.00
Drosophila melanogaster
NNVCACCTGTYNN
NNRACAGGTGBNN
SMiLE-seq
Isakova et al.(2017)
Sna
0.797
0.921
sna
M06069_2.00
Drosophila melanogaster
SMACYTGYBN
NVRCARGTKS
B1H
Zhu et al.(2011)
sna_FlyReg_FBgn0003448
0.797
0.921
sna
M06070_2.00
Drosophila melanogaster
SCACCTGWYV
BRWCAGGTGS
B1H
Zhu et al.(2011)
sna_SANGER_10_FBgn0003448
0.797
0.921
sna
M06071_2.00
Drosophila melanogaster
MCACCTGTYVHNNN
NNNDBRACAGGTGK
B1H
Zhu et al.(2011)
sna_SOLEXA_5_FBgn0003448
0.797
0.921
sna
M09664_2.00
Drosophila melanogaster
VMACCTGYB
VRCAGGTKB
Misc
Kulakovskiy et al.(2009)
sna
0.797
0.921
sna
M10375_2.00
Drosophila melanogaster
NKRCACCTGTYNB
VNRACAGGTGYMN
Transfac
Matys et al.(2006)
I$SN_01
0.797
0.921
sna
M10376_2.00
Drosophila melanogaster
WSBHADCAVSTKSK
MSMASBTGHTDVSW
Transfac
Matys et al.(2006)
I$SN_02
0.797
0.921
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
LCUP006861-PA
C2H2 ZF
270
292
FKCDKCNKMYSTSMGLSKHQQFH
LCUP006861-PA
C2H2 ZF
305
327
HACQDCGKLYTTMGALKMHIRTH
LCUP006861-PA
C2H2 ZF
331
353
CKCPICGKAFSRPWLLQGHIRTH
LCUP006861-PA
C2H2 ZF
359
381
FQCPDCPRSFADRSNLRAHQQTH
LCUP006861-PA
C2H2 ZF
387
408
YACKVCHKSFSRMSLLNKHASS
Links
Other
C2H2 ZF
family TFs
Other
Lucilia cuprina
TFs
12 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy