CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PK17145.1
(
Cannabis sativa
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
PK17145.1
T144906_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SGR5
M06805_2.00
Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW
Dap-seq
OMalley et al.(2016)
SGR5_col_a
0.783
0.907
SGR5
M06806_2.00
Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW
Dap-seq
OMalley et al.(2016)
SGR5_colamp_a
0.783
0.907
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PK17145.1
C2H2 ZF
158
179
WVCQRCSKAYAVHSDFKAHLKT
PK17145.1
C2H2 ZF
178
204
KTCGTRGHSCDCGRVFSRVESFIEHQD
Links
Other
C2H2 ZF
family TFs
Other
Cannabis sativa
TFs
140 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy