PK17145.1 (Cannabis sativa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 PK17145.1 T144906_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SGR5
M06805_2.00
Arabidopsis thaliana
WTTTTGTCTTWTHYD

HRDAWAAGACAAAAW
Dap-seq
OMalley et al.(2016)
SGR5_col_a
0.783 0.907
SGR5
M06806_2.00
Arabidopsis thaliana
WTTTGTCTYWWHBNN

NNVDWWRAGACAAAW
Dap-seq
OMalley et al.(2016)
SGR5_colamp_a
0.783 0.907
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK17145.1 C2H2 ZF 158 179
PK17145.1 C2H2 ZF 178 204

Links

Other C2H2 ZF family TFs
Other Cannabis sativa TFs

140 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GLYMA03G10320 Glycine max GLYMA03G10320 N 0.000
29767.m000200 Ricinus communis 29767.m000200 N 0.000
cassava2361.valid.m1 Manihot esculenta cassava2361.valid.m1 N 0.000
Cucsa.175500 Cucumis sativus Cucsa.175500 N 0.000
mgf011165m Mimulus guttatus mgf011165m N 0.000
Ciclev10011141m.g Citrus clementina Ciclev10011141m.g N 0.000
Eucgr.A01279 Eucalyptus grandis Eucgr.A01279 N 0.000
Lus10024384.g Linum usitatissimum Lus10024384.g N 0.000
orange1.1g004514m.g Citrus sinensis orange1.1g004514m.g N 0.000
SapurV1A.0001s1700 Salix purpurea SapurV1A.0001s1700 N 0.000
Pm002685 Prunus mume Pm002685 N 0.000
Cla018179 Citrullus lanatus Cla018179 N 0.000
Ca_21138 Cicer arietinum Ca_21138 N 0.000
GLYMA07G15950 Glycine max GLYMA07G15950 N 0.000
GLYMA18G39920 Glycine max GLYMA18G39920 N 0.000
MTR_7g062120 Medicago truncatula MTR_7g062120 N 0.000
PGSC0003DMG400008904 Solanum tuberosum PGSC0003DMG400008904 N 0.000
PGSC0003DMG400019200 Solanum tuberosum PGSC0003DMG400019200 N 0.000
POPTR_0006s08690 Populus trichocarpa POPTR_0006s08690 N 0.000
PRUPE_ppa001883mg Prunus persica PRUPE_ppa001883mg N 0.000
TCM_021920 Theobroma cacao TCM_021920 N 0.000
VIT_08s0007g00510 Vitis vinifera VIT_08s0007g00510 N 0.000
PK20526.1 Cannabis sativa PK20526.1 N 0.000