PK17145.1 (Cannabis sativa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 PK17145.1 T144906_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SGR5
M06805_2.00
Arabidopsis thaliana
WTTTTGTCTTWTHYD

HRDAWAAGACAAAAW
Dap-seq
OMalley et al.(2016)
SGR5_col_a
0.783 0.907
SGR5
M06806_2.00
Arabidopsis thaliana
WTTTGTCTYWWHBNN

NNVDWWRAGACAAAW
Dap-seq
OMalley et al.(2016)
SGR5_colamp_a
0.783 0.907
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK17145.1 C2H2 ZF 158 179
PK17145.1 C2H2 ZF 178 204

Links

Other C2H2 ZF family TFs
Other Cannabis sativa TFs

140 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_43255 Aegilops tauschii F775_43255 I 0.792
Aquca_002_01252 Aquilegia coerulea Aquca_002_01252 I 0.786
SGR5 Arabidopsis lyrata fgenesh2_kg.5__108__AT2G01940.1 I 0.783
AtIDD14 Arabidopsis lyrata fgenesh2_kg.2__1036__AT1G68130.1 I 0.759
AtIDD16 Arabidopsis thaliana AT1G25250 I 0.783
SGR5 Arabidopsis thaliana AT2G01940 D 0.783
IDD14 Arabidopsis thaliana AT1G68130 I 0.759
Bostr.0556s0022 Boechera stricta Bostr.0556s0022 I 0.783
Bostr.15697s0010 Boechera stricta Bostr.15697s0010 I 0.783
Bostr.26959s0085 Boechera stricta Bostr.26959s0085 I 0.759
BRADI1G68730 Brachypodium distachyon BRADI1G68730 I 0.792
BRADI4G31770 Brachypodium distachyon BRADI4G31770 I 0.788
BRADI3G37890 Brachypodium distachyon BRADI3G37890 I 0.788
Bo6g106560 Brassica oleracea Bo6g106560 I 0.759
Bo2g134790 Brassica oleracea Bo2g134790 I 0.783
Bo3g139880 Brassica oleracea Bo3g139880 I 0.783
Bo5g043540 Brassica oleracea Bo5g043540 I 0.783
Bo6g097320 Brassica oleracea Bo6g097320 I 0.759
Bo9g070370 Brassica oleracea Bo9g070370 I 0.783
Bra017432 Brassica rapa Bra017432 I 0.783
Bra004050 Brassica rapa Bra004050 I 0.759
Bra004283 Brassica rapa Bra004283 I 0.759
Bra010981 Brassica rapa Bra010981 I 0.783
Bra026624 Brassica rapa Bra026624 I 0.783
Bra024841 Brassica rapa Bra024841 I 0.777
Bra024771 Brassica rapa Bra024771 I 0.783
PK25720.1 Cannabis sativa PK25720.1 I 0.777
Cagra.3834s0006 Capsella grandiflora Cagra.3834s0006 I 0.783
Cagra.2231s0014 Capsella grandiflora Cagra.2231s0014 I 0.783
Cagra.1111s0006 Capsella grandiflora Cagra.1111s0006 I 0.759
Carubv10009424m.g Capsella rubella Carubv10009424m.g I 0.783
Carubv10017254m.g Capsella rubella Carubv10017254m.g I 0.783
Carubv10020337m.g Capsella rubella Carubv10020337m.g I 0.759
evm.TU.supercontig_2.118 Carica papaya evm.TU.supercontig_2.118 I 0.777
evm.TU.supercontig_7.131 Carica papaya evm.TU.supercontig_7.131 I 0.786
Ca_22171 Cicer arietinum Ca_22171 I 0.792
Ca_05083 Cicer arietinum Ca_05083 I 0.786
Cla005913 Citrullus lanatus Cla005913 I 0.806
Cla018945 Citrullus lanatus Cla018945 I 0.786
Ciclev10020125m.g Citrus clementina Ciclev10020125m.g I 0.786
Ciclev10015315m.g Citrus clementina Ciclev10015315m.g I 0.786
orange1.1g014184m.g Citrus sinensis orange1.1g014184m.g I 0.786
orange1.1g037502m.g Citrus sinensis orange1.1g037502m.g I 0.786
Cucsa.122150 Cucumis sativus Cucsa.122150 I 0.777
Cucsa.112090 Cucumis sativus Cucsa.112090 I 0.786
Eucgr.G02066 Eucalyptus grandis Eucgr.G02066 I 0.783
Eucgr.H00574 Eucalyptus grandis Eucgr.H00574 I 0.783
Eucgr.K02292 Eucalyptus grandis Eucgr.K02292 I 0.783
Thhalv10009376m.g Eutrema salsugineum Thhalv10009376m.g I 0.783
Thhalv10018614m.g Eutrema salsugineum Thhalv10018614m.g I 0.759
Thhalv10004221m.g Eutrema salsugineum Thhalv10004221m.g I 0.783
gene00618-v1.0-hybrid Fragaria vesca gene00618-v1.0-hybrid I 0.777
gene09325-v1.0-hybrid Fragaria vesca gene09325-v1.0-hybrid I 0.786
GLYMA05G33590 Glycine max GLYMA05G33590 I 0.792
GLYMA08G06130 Glycine max GLYMA08G06130 I 0.792
GLYMA08G09760 Glycine max GLYMA08G09760 I 0.786
GLYMA09G30030 Glycine max GLYMA09G30030 I 0.792
GLYMA05G26780 Glycine max GLYMA05G26780 I 0.786
GLYMA07G12170 Glycine max GLYMA07G12170 I 0.792
Gorai.008G169500 Gossypium raimondii Gorai.008G169500 I 0.767
Gorai.008G293000 Gossypium raimondii Gorai.008G293000 I 0.786
Gorai.002G171100 Gossypium raimondii Gorai.002G171100 I 0.786
Gorai.005G134600 Gossypium raimondii Gorai.005G134600 I 0.777
Gorai.009G329200 Gossypium raimondii Gorai.009G329200 I 0.777
Gorai.006G190500 Gossypium raimondii Gorai.006G190500 I 0.782
Gorai.007G002600 Gossypium raimondii Gorai.007G002600 I 0.782
MLOC_57613 Hordeum vulgare MLOC_57613 I 0.788
LPERR09G08790 Leersia perrieri LPERR09G08790 I 0.788
LPERR08G14510 Leersia perrieri LPERR08G14510 I 0.798
LPERR03G08760 Leersia perrieri LPERR03G08760 I 0.792
Lus10026369.g Linum usitatissimum Lus10026369.g I 0.777
Lus10031882.g Linum usitatissimum Lus10031882.g I 0.786
Lus10031314.g Linum usitatissimum Lus10031314.g I 0.786
chr4.CM0387.280.nc Lotus japonicus chr4.CM0387.280.nc I 0.777
cassava18079.valid.m1 Manihot esculenta cassava18079.valid.m1 I 0.786
cassava36596.valid.m1 Manihot esculenta cassava36596.valid.m1 I 0.777
cassava1947.valid.m1 Manihot esculenta cassava1947.valid.m1 I 0.777
mgf008235m Mimulus guttatus mgf008235m I 0.792
GSMUA_Achr6G02490_001 Musa acuminata GSMUA_Achr6G02490_001 I 0.783
GSMUA_Achr10G29940_001 Musa acuminata GSMUA_Achr10G29940_001 I 0.767
GSMUA_Achr7G18610_001 Musa acuminata GSMUA_Achr7G18610_001 I 0.777
OBART09G12250 Oryza barthii OBART09G12250 I 0.788
OBART08G17550 Oryza barthii OBART08G17550 I 0.798
OB09G18760 Oryza brachyantha OB09G18760 I 0.783
ORGLA09G0169200 Oryza glaberrima ORGLA09G0169200 I 0.798
ORGLA09G0092400 Oryza glaberrima ORGLA09G0092400 I 0.788
ORGLA08G0153600 Oryza glaberrima ORGLA08G0153600 I 0.798
ORGLA03G0094200 Oryza glaberrima ORGLA03G0094200 I 0.792
OGLUM09G12720 Oryza glumaepatula OGLUM09G12720 I 0.788
OGLUM03G09920 Oryza glumaepatula OGLUM03G09920 I 0.792
OGLUM08G18370 Oryza glumaepatula OGLUM08G18370 I 0.798
BGIOSGA011151 Oryza indica BGIOSGA011151 I 0.792
BGIOSGA030871 Oryza indica BGIOSGA030871 I 0.788
OMERI09G13410 Oryza meridionalis OMERI09G13410 I 0.788
OMERI03G09110 Oryza meridionalis OMERI03G09110 I 0.792
OMERI08G14120 Oryza meridionalis OMERI08G14120 I 0.798
ONIVA09G13010 Oryza nivara ONIVA09G13010 I 0.788
ONIVA03G10380 Oryza nivara ONIVA03G10380 I 0.792
ONIVA08G19430 Oryza nivara ONIVA08G19430 I 0.798
OPUNC08G15410 Oryza punctata OPUNC08G15410 I 0.798
OPUNC09G10740 Oryza punctata OPUNC09G10740 I 0.788
OPUNC03G09440 Oryza punctata OPUNC03G09440 I 0.792
ORUFI09G13180 Oryza rufipogon ORUFI09G13180 I 0.788
ORUFI03G10000 Oryza rufipogon ORUFI03G10000 I 0.792
OS08G0467100 Oryza sativa OS08G0467100 I 0.798
OS03G0237250 Oryza sativa OS03G0237250 I 0.792
Pavir.Fb01741 Panicum virgatum Pavir.Fb01741 I 0.788
Pavir.Ba02057 Panicum virgatum Pavir.Ba02057 I 0.788
Pavir.J40191 Panicum virgatum Pavir.J40191 I 0.788
Pavir.J12350 Panicum virgatum Pavir.J12350 I 0.792
Pavir.Fa00691 Panicum virgatum Pavir.Fa00691 I 0.788
POPTR_0012s03730 Populus trichocarpa POPTR_0012s03730 I 0.786
POPTR_0008s13980 Populus trichocarpa POPTR_0008s13980 I 0.786
POPTR_0015s05180 Populus trichocarpa POPTR_0015s05180 I 0.777
POPTR_0010s11160 Populus trichocarpa POPTR_0010s11160 I 0.786
Pm025274 Prunus mume Pm025274 I 0.786
Pm005926 Prunus mume Pm005926 I 0.777
PRUPE_ppa005331mg Prunus persica PRUPE_ppa005331mg I 0.777
PRUPE_ppa004447mg Prunus persica PRUPE_ppa004447mg I 0.786
28952.m000016 Ricinus communis 28952.m000016 I 0.786
SapurV1A.1169s0070 Salix purpurea SapurV1A.1169s0070 I 0.786
SapurV1A.0074s0350 Salix purpurea SapurV1A.0074s0350 I 0.777
SapurV1A.0055s0020 Salix purpurea SapurV1A.0055s0020 I 0.786
SapurV1A.0015s0850 Salix purpurea SapurV1A.0015s0850 I 0.762
Si029726m.g Setaria italica Si029726m.g I 0.788
Solyc06g072360.2 Solanum lycopersicum Solyc06g072360.2 I 0.786
PGSC0003DMG400031049 Solanum tuberosum PGSC0003DMG400031049 I 0.786
PGSC0003DMG400026959 Solanum tuberosum PGSC0003DMG400026959 I 0.777
Sb02g026230 Sorghum bicolor Sb02g026230 I 0.788
Sb07g022700 Sorghum bicolor Sb07g022700 I 0.788
TCM_039880 Theobroma cacao TCM_039880 I 0.777
TCM_011210 Theobroma cacao TCM_011210 I 0.786
Traes_4AS_2718699A7 Triticum aestivum Traes_4AS_2718699A7 I 0.792
VIT_01s0011g06400 Vitis vinifera VIT_01s0011g06400 I 0.786
VIT_17s0000g01870 Vitis vinifera VIT_17s0000g01870 I 0.786
GRMZM2G110107 Zea mays GRMZM2G110107 I 0.788
GRMZM2G074032 Zea mays GRMZM2G074032 I 0.792
GRMZM2G141031 Zea mays GRMZM2G141031 I 0.788
GRMZM2G123094 Zea mays GRMZM2G123094 I 0.788
GRMZM2G465595 Zea mays GRMZM2G465595 I 0.792