Scas_Contig649.29 (Saccharomyces castellii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Scas_Contig649.29 T144957_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MSN4
M00032_2.00
Saccharomyces cerevisiae
NYCCCYNN

NNRGGGRN
PBM
Badis et al.(2008)
MSN4_2121
0.816 0.935
MSN4
M07462_2.00
Saccharomyces cerevisiae
CCCCT

AGGGG
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0342.1
0.816 0.935
MSN4
M08533_2.00
Saccharomyces cerevisiae
CCCCT

AGGGG
Misc
DeBoer et al.(2011)
YKL062W_518
0.816 0.935
KLLA0_F26961g
M01039_2.00
Kluyveromyces lactis
CYCCYTD

HARGGRG
PBM
Siggers et al.(2014)
KLLA0F29691gKlac
0.787 0.826
MSN2
M00036_2.00
Saccharomyces cerevisiae
NVCCCCTK

MAGGGGBN
PBM
Badis et al.(2008)
MSN2_2101
0.781 0.761
MSN2
M07466_2.00
Saccharomyces cerevisiae
CCCCY

RGGGG
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0341.1
0.781 0.761
MSN2
M08538_2.00
Saccharomyces cerevisiae
NHYCCKN

NMGGRDN
Misc
DeBoer et al.(2011)
YMR037C_1380
0.781 0.761
MSN2
M10399_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$MSN2_Q4
0.781 0.761
CAGL0M13189g
M01034_2.00
Candida glabrata
MYCCBBDNN

NNHVVGGRK
PBM
Siggers et al.(2014)
CAGL0M13189gCgla
0.768 0.870
CaO19.4752
M01035_2.00
Candida albicans
VCCCCYDNNN

NNNHRGGGGB
PBM
Siggers et al.(2014)
Msn4_orf19.4752Calb
0.767 0.804
CAGL0F05995g
M01032_2.00
Candida glabrata
NYCCYYNN

NNRRGGRN
PBM
Siggers et al.(2014)
CAGL0F05995gCgla
0.757 0.783
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Scas_Contig649.29 C2H2 ZF 673 696
Scas_Contig649.29 C2H2 ZF 702 724

Links

Other C2H2 ZF family TFs
Other Saccharomyces castellii TFs

Invalid Input OrderBy

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action