CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Scas_Contig681.19
(
Saccharomyces castellii
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Scas_Contig681.19
T144960_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RPH1
M00025_2.00
Saccharomyces cerevisiae
NNHCCCCTAAN
NTTAGGGGDNN
PBM
Badis et al.(2008)
RPH1_4571
0.798
0.867
RPH1
M01531_2.00
Saccharomyces cerevisiae
YNMCCCCTWWWW
WWWWAGGGGKNR
PBM
Zhu et al.(2009)
Rph1
0.798
0.867
RPH1
M07455_2.00
Saccharomyces cerevisiae
NCCCCTWA
TWAGGGGN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0372.1
0.798
0.867
RPH1
M08522_2.00
Saccharomyces cerevisiae
NCCCCTWA
TWAGGGGN
Misc
DeBoer et al.(2011)
YER169W_547
0.798
0.867
GIS1
M00019_2.00
Saccharomyces cerevisiae
NCCCCTWDNN
NNHWAGGGGN
PBM
Badis et al.(2008)
GIS1_4481
0.792
0.867
GIS1
M07449_2.00
Saccharomyces cerevisiae
HCCCCTWDN
NHWAGGGGD
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0306.1
0.792
0.867
GIS1
M08515_2.00
Saccharomyces cerevisiae
HCCCCTWDN
NHWAGGGGD
Misc
DeBoer et al.(2011)
YDR096W_562
0.792
0.867
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Scas_Contig681.19
C2H2 ZF
765
788
YVCLECKRQFTSGHHLTRHKKSVH
Scas_Contig681.19
C2H2 ZF
794
815
HSCPKCGKKFKRRDHVLQHLNK
Links
Other
C2H2 ZF
family TFs
Other
Saccharomyces castellii
TFs
35 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy