Scas_Contig703.23 (Saccharomyces castellii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Scas_Contig703.23 T144968_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TDA9
M00035_2.00
Saccharomyces cerevisiae
NNCCCCGCAH

DTGCGGGGNN
PBM
Badis et al.(2008)
YML081W_2152
0.806 0.935
TDA9
M01537_2.00
Saccharomyces cerevisiae
NNCCCCDCHN

NDGHGGGGNN
PBM
Zhu et al.(2009)
Yml081w
0.806 0.935
TDA9
M07465_2.00
Saccharomyces cerevisiae
NCCCCDCHN

NDGHGGGGN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0431.1
0.806 0.935
TDA9
M08537_2.00
Saccharomyces cerevisiae
NHDNRHTACCCCGCWNHNNNB

VNNNDNWGCGGGGTADYNHDN
Misc
DeBoer et al.(2011)
YML081W_848
0.806 0.935
RSF2
M00031_2.00
Saccharomyces cerevisiae
NDCCCCKCWN

NWGMGGGGHN
PBM
Badis et al.(2008)
ZMS1_4493
0.802 0.913
RSF2
M07461_2.00
Saccharomyces cerevisiae
NWCCCCDCW

WGHGGGGWN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0441.1
0.802 0.913
RSF2
M08532_2.00
Saccharomyces cerevisiae
NWCCCCDCW

WGHGGGGWN
Misc
DeBoer et al.(2011)
YJR127C_575
0.802 0.913
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Scas_Contig703.23 C2H2 ZF 72 94
Scas_Contig703.23 C2H2 ZF 100 123

Links

Other C2H2 ZF family TFs
Other Saccharomyces castellii TFs

Invalid Input OrderBy

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action