CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SMU15001129
(
Schmidtea mediterranea
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
SMU15001129
T145083_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
cbt
M03705_2.00
Drosophila melanogaster
DMCACRCCCMY
RKGGGYGTGKH
SELEX
Nitta et al.(2015)
cbt_1
0.773
0.725
cbt
M03706_2.00
Drosophila melanogaster
RMCRCGCCCMCHH
DDGKGGGCGYGKY
SELEX
Nitta et al.(2015)
cbt_2
0.773
0.725
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SMU15001129
C2H2 ZF
139
163
FKCNYKSCLKAYYKSSHLKAHIRVH
SMU15001129
C2H2 ZF
169
193
YICNWENCQRRFTRSDELSRHKRTH
SMU15001129
C2H2 ZF
199
221
FSCSICQRKFNRSDHLSKHIKTH
Links
Other
C2H2 ZF
family TFs
Other
Schmidtea mediterranea
TFs
37 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy