CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SMU15033928
(
Schmidtea mediterranea
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
SMU15033928
T145189_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
opa
M03668_2.00
Drosophila melanogaster
BVCCCCCCRYNGHB
VDCNRYGGGGGGBV
SELEX
Nitta et al.(2015)
opa_1
0.767
0.837
opa
M05861_2.00
Drosophila melanogaster
VCCCCCCRYNGNK
MNCNRYGGGGGGB
SMiLE-seq
Isakova et al.(2017)
Opa
0.767
0.837
opa
M06468_2.00
Drosophila melanogaster
GMCCCCCCGCDG
CHGCGGGGGGKC
B1H
Mathelier et al.(2014)
MA0456.1
0.767
0.837
opa
M06062_2.00
Drosophila melanogaster
GMCCCCCCRCDG
CHGYGGGGGGKC
B1H
Zhu et al.(2011)
opa_NAR_FBgn0003002
0.767
0.837
opa
M06063_2.00
Drosophila melanogaster
MKVMMCCCCMCYR
YRGKGGGGKKBMK
B1H
Zhu et al.(2011)
Opa_SANGER_5_FBgn0003002
0.767
0.837
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SMU15033928
C2H2 ZF
222
249
HTCYWKNCTRDFKPFKAKYKLVNHLRVH
SMU15033928
C2H2 ZF
255
279
FQCPFLSCGKLFARSENLKIHKRTH
SMU15033928
C2H2 ZF
285
309
FKCDFEGCDRRFANSSDRKKHMHVH
SMU15033928
C2H2 ZF
315
339
YFCKQEGCDKSYTHPSSLRKHMRIH
Links
Other
C2H2 ZF
family TFs
Other
Schmidtea mediterranea
TFs
68 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SMU15031708
Schmidtea mediterranea
SMU15031708
I
0.816
Sakowv30026420m.g
Saccoglossus kowalevskii
Sakowv30026420m.g
I
0.788
T265_00048
Opisthorchis viverrini
T265_00048
I
0.787
csin109208
Clonorchis sinensis
csin109208
I
0.787
tetur11g00650
Tetranychus urticae
tetur11g00650
I
0.782
TMUE_s0101002100
Trichuris muris
TMUE_s0101002100
I
0.779
ENSACAG00000003701
Anolis carolinensis
ENSACAG00000003701
I
0.777
Ogr17257
Ophisaurus gracilis
Ogr17257
I
0.777
ENSGMOG00000004419
Gadus morhua
ENSGMOG00000004419
I
0.776
nRc.2.0.1.g22468
Romanomermis culicivorax
nRc.2.0.1.g22468
I
0.773
ENSPFOG00000012980
Poecilia formosa
ENSPFOG00000012980
I
0.773
ENSONIG00000002719
Oreochromis niloticus
ENSONIG00000002719
I
0.773
zic6
Danio rerio
ENSDARG00000071496
I
0.773
ENSAMXG00000012318
Astyanax mexicanus
ENSAMXG00000012318
I
0.773
SPAL_0001746600
Strongyloides papillosus
SPAL_0001746600
I
0.772
SSTP_0000201100
Strongyloides stercoralis
SSTP_0000201100
I
0.772
SVE_0347600
Strongyloides venezuelensis
SVE_0347600
I
0.772
CGI_10016115
Crassostrea gigas
CGI_10016115
I
0.772
ENSCSAVG00000002459
Ciona savignyi
ENSCSAVG00000002459
N
0.772
Pvit_01334
Pogona vitticeps
Pvit_01334
I
0.770
CGI_10016117
Crassostrea gigas
CGI_10016117
I
0.770
TC010234
Tribolium castaneum
TC010234
I
0.770
MDOA000052
Musca domestica
MDOA000052
I
0.770
SNAPOd2T00002718001
Oikopleura dioica
SNAPOd2T00002718001
I
0.770
ENSCING00000002517
Ciona intestinalis
ENSCING00000002517
N
0.768
ENSCSAVG00000002450
Ciona savignyi
ENSCSAVG00000002450
N
0.768
Cmyd_10016551
Chelonia mydas
Cmyd_10016551
I
0.768
ENSCSAVG00000002454
Ciona savignyi
ENSCSAVG00000002454
N
0.768
DAPPUDRAFT_290567
Daphnia pulex
DAPPUDRAFT_290567
I
0.768
ENSCSAVG00000002442
Ciona savignyi
ENSCSAVG00000002442
N
0.768
ENSCING00000000010
Ciona intestinalis
ENSCING00000000010
N
0.768
ENSCING00000021681
Ciona intestinalis
ENSCING00000021681
N
0.768
ENSCING00000000012
Ciona intestinalis
ENSCING00000000012
N
0.768
ENSCSAVG00000002465
Ciona savignyi
ENSCSAVG00000002465
N
0.768
GK13239
Drosophila willistoni
FBgn0215248
I
0.767
HelroG77001
Helobdella robusta
HelroG77001
N
0.767
KGM_22387
Danaus plexippus
KGM_22387
I
0.767
GJ11051
Drosophila virilis
FBgn0198317
I
0.767
GH23039
Drosophila grimshawi
FBgn0130496
I
0.767
GA10924
Drosophila pseudoobscura
FBgn0070980
I
0.767
GF18915
Drosophila ananassae
FBgn0095929
I
0.767
opa
Drosophila melanogaster
FBgn0003002
D
0.767
GD19752
Drosophila simulans
FBgn0191241
I
0.767
ENSSHAG00000015025
Sarcophilus harrisii
ENSSHAG00000015025
I
0.767
GG12590
Drosophila erecta
FBgn0104878
I
0.767
AGAP001291
Anopheles gambiae
AGAP001291
I
0.767
GL21621
Drosophila persimilis
FBgn0159214
I
0.767
GM10780
Drosophila sechellia
FBgn0165726
I
0.767
GI10245
Drosophila mojavensis
FBgn0133010
I
0.767
ZIC1
Monodelphis domestica
ENSMODG00000021251
I
0.767
ENSDORG00000012706
Dipodomys ordii
ENSDORG00000012706
I
0.765
ENSOANG00000012152
Ornithorhynchus anatinus
ENSOANG00000012152
I
0.765
ZIC5
Oryctolagus cuniculus
ENSOCUG00000026498
I
0.765
ZIC5
Ochotona princeps
ENSOPRG00000007526
I
0.765
ENSPPYG00000005471
Pongo abelii
ENSPPYG00000005471
I
0.765
ZIC5
Sus scrofa
ENSSSCG00000009521
I
0.765
ENSMMUP00000019456
Macaca fascicularis
ENSMMUP00000019456
I
0.765
GB54250
Apis mellifera
GB54250
I
0.765
NV11451
Nasonia vitripennis
NV11451
I
0.765
ENSCSAVG00000001907
Ciona savignyi
ENSCSAVG00000001907
I
0.763
macho1
Ciona intestinalis
ENSCING00000007968
I
0.763
WBGene00239980
Onchocerca volvulus
WBGene00239980
I
0.761
NEMVEDRAFT_v1g25267
Nematostella vectensis
NEMVEDRAFT_v1g25267
I
0.760
RSKR_0001155900
Rhabditophanes kr3021
RSKR_0001155900
I
0.760
PTRK_0000799900
Parastrongyloides trichosuri
PTRK_0000799900
I
0.760
HDID_0001034301
Hymenolepis diminuta
HDID_0001034301
N
0.758
nLs.2.1.2.g02824
Litomosoides sigmodontis
nLs.2.1.2.g02824
I
0.756
TCLT_0000586501
Thelazia callipaeda
TCLT_0000586501
I
0.756