CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SNAPOd2T00000985001
(
Oikopleura dioica
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
SNAPOd2T00000985001
T145219_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CG42741
M06169_2.00
Drosophila melanogaster
RCCACRCCCWHY
RDWGGGYGTGGY
B1H
Zhu et al.(2011)
CG9895_SANGER_10_FBgn0034810
0.757
0.768
CG42741
M06170_2.00
Drosophila melanogaster
VRCCACRCCCH
DGGGYGTGGYB
B1H
Zhu et al.(2011)
CG9895_SOLEXA_5_FBgn0034810
0.757
0.768
klf-3
M00617_2.00
Caenorhabditis elegans
NHMCGCCCH
DGGGCGKDN
PBM
Narasimhan et al.(2015)
pTH9072
0.757
0.710
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SNAPOd2T00000985001
C2H2 ZF
156
180
HICDYPNCGKAYTKSSHLKAHRRTH
SNAPOd2T00000985001
C2H2 ZF
186
210
YSCTWPECEWKFARSDELTRHYRKH
SNAPOd2T00000985001
C2H2 ZF
216
238
FVCTVCNRAFSRSDHLSLHVKRH
Links
Other
C2H2 ZF
family TFs
Other
Oikopleura dioica
TFs
123 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy