CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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prdm15
(
Xenopus tropicalis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
XB-GENE-1013930
T145352_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PRDM15
M10222_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM15_04
0.762
0.909
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
XP_002941334
C2H2 ZF
517
539
FQCNICAKVFRNSSNLSRHVRSH
XP_002941334
C2H2 ZF
544
567
FKCEECSKLFSRKESLKQHVSYKH
XP_002941334
C2H2 ZF
578
596
YRCNTCEKAFRIQGFLEFH
XP_002941334
C2H2 ZF
605
627
FQCEMCYRFFSTNSNLSKHKKKH
XP_002941334
C2H2 ZF
632
654
FACEICNKLFYRRDVMLEHHRRH
XP_002941334
C2H2 ZF
682
703
ACPVCGKMFSCRSNMNKHLLTH
XP_002941334
C2H2 ZF
708
730
YTCEICGRKFFRVDVLRDHIHIH
XP_002941334
C2H2 ZF
771
794
YSCKRCQISFARGKEYLKHIMDIH
XP_002941334
C2H2 ZF
799
821
YDCSICHRRFALKATYHAHMVIH
XP_002941334
C2H2 ZF
835
857
HPCEVCGRIFNSIGNLERHKLIH
XP_002941334
C2H2 ZF
865
885
CEQCGKSFARKDMLKEHMRVH
XP_002941334
C2H2 ZF
891
913
YLCAECGKGMKTKHALRHHMKLH
XP_002941334
C2H2 ZF
919
941
YECMECHRRFAQKVNMLKHYKRH
XP_002941334
C2H2 ZF
947
969
FMCELCGKTFSEKNTMETHKLIH
XP_002941334
C2H2 ZF
975
998
WTCTVCDKKYVTEYMLQKHVQLTH
XP_002941334
C2H2 ZF
1004
1027
QSCNLCGTKVSTRASMSRHLRRKH
Links
Other
C2H2 ZF
family TFs
Other
Xenopus tropicalis
TFs
31 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy