CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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osr1
(
Xenopus tropicalis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
XB-GENE-481410
T145416_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Osr1
M00144_2.00
Mus musculus
NVCTHCYNN
NNRGDAGBN
PBM
Badis et al.(2009)
Osr1_3033
0.827
1.000
Osr1
M01174_2.00
Mus musculus
GCTACYGT
ACRGTAGC
PBM
Lambert et al.(2019)
pTH5339
0.827
1.000
OSR1
M04477_2.00
Homo sapiens
NGCTACYGTD
HACRGTAGCN
SELEX
Yin et al.(2017)
OSR1_eDBD_HT-SELEX
0.827
1.000
OSR1
M04478_2.00
Homo sapiens
NGCTACYGTD
HACRGTAGCN
SELEX
Yin et al.(2017)
OSR1_eDBD_Methyl-HT-SELEX
0.827
1.000
Osr2
M00132_2.00
Mus musculus
NGCTWCYGNN
NNCRGWAGCN
PBM
Badis et al.(2009)
Osr2_1727
0.811
0.986
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAH80931
C2H2 ZF
168
190
FVCKFCGRHFTKSYNLLIHERTH
AAH80931
C2H2 ZF
196
218
YTCDICHKAFRRQDHLRDHRYIH
AAH80931
C2H2 ZF
224
246
FKCQECGKGFCQSRTLAVHKTLH
CAJ81997
C2H2 ZF
168
190
FVCKFCGRHFTKSYNLLIHERTH
CAJ81997
C2H2 ZF
196
218
YTCDICHKAFRRQDHLRDHRYIH
CAJ81997
C2H2 ZF
224
246
FKCQECGKGFCQSRTLAVHKTLH
Links
Other
C2H2 ZF
family TFs
Other
Xenopus tropicalis
TFs
105 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy