gli1 (Xenopus tropicalis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 XB-GENE-482644 T145422_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GLI3
M04416_2.00 		Homo sapiens
VGACCACCCACVNHG
CDNBGTGGGTGGTCB		 SELEX
Yin et al.(2017)
GLI3_eDBD_HT-SELEX 		0.778 0.939
GLI3
M02642_2.00 		Homo sapiens
GACCACCCANK
MNTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI3 		0.778 0.939
GLI3
M08875_2.00 		Homo sapiens
VRACCACCCAV
BTGGGTGGTYB		 Misc
Kulakovskiy et al.(2013)
GLI3_HUMAN.H11MO.0.B 		0.778 0.939
GLI3
M10167_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI3_01 		0.778 0.939
GLI3
M10168_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI3_Q5_01 		0.778 0.939
GLI3
M04417_2.00 		Homo sapiens
CWHBGTGGGTGGTCY
RGACCACCCACVDWG		 SELEX
Yin et al.(2017)
GLI3_eDBD_Methyl-HT-SELEX 		0.778 0.939
Gli2
M01024_2.00 		Mus musculus
NGACCACCYN
NRGGTGGTCN		 PBM
Peterson et al.(2012)
Gli2 		0.761 0.922
GLI2
M02875_2.00 		Homo sapiens
GMCCACMCANVNHB
VDNBNTGKGTGGKC		 SELEX
Jolma et al.(2013)
GLI2_1 		0.761 0.922
GLI2
M02876_2.00 		Homo sapiens
GCGACCACVCWR
YWGBGTGGTCGC		 SELEX
Jolma et al.(2013)
GLI2_2 		0.761 0.922
GLI2
M02732_2.00 		Homo sapiens
GACCACMCAN
NTGKGTGGTC		 SELEX
Jolma et al.(2010)
GLI2_monomer 		0.761 0.922
GLI2
M04402_2.00 		Homo sapiens
VGACCACCCACVDHG
CDHBGTGGGTGGTCB		 SELEX
Yin et al.(2017)
GLI2_eDBD_HT-SELEX 		0.761 0.922
GLI2
M02641_2.00 		Homo sapiens
GACCACCCAHG
CDTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI2 		0.761 0.922
GLI2
M10114_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI2_Q3 		0.761 0.922
GLI2
M10115_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI2_Q6 		0.761 0.922
GLI2
M04403_2.00 		Homo sapiens
RGACCACCCACVWWG
CWWBGTGGGTGGTCY		 SELEX
Yin et al.(2017)
GLI2_eDBD_Methyl-HT-SELEX 		0.761 0.922
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002939471 C2H2 ZF 250 275
XP_002939471 C2H2 ZF 283 310
XP_002939471 C2H2 ZF 316 340
XP_002939471 C2H2 ZF 346 371
XP_002939471 C2H2 ZF 377 402

Links

Other C2H2 ZF family TFs
Other Xenopus tropicalis TFs

117 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gli1.S Xenopus laevis XB-GENE-864895 I 0.827
ENSAMXG00000017236 Astyanax mexicanus ENSAMXG00000017236 I 0.783
GLI1 Anolis carolinensis ENSACAG00000006541 I 0.781
Pvit_05813 Pogona vitticeps Pvit_05813 I 0.781
ENSLOCG00000005938 Lepisosteus oculatus ENSLOCG00000005938 I 0.781
GLI3 Otolemur garnettii ENSOGAG00000012651 I 0.778
GLI3 Oryctolagus cuniculus ENSOCUG00000006563 I 0.778
ENSOARG00000017420 Ovis aries ENSOARG00000017420 I 0.778
GLI3 Ochotona princeps ENSOPRG00000011225 I 0.778
ENSPANG00000014545 Papio anubis ENSPANG00000014545 I 0.778
ENSPPYG00000017613 Pongo abelii ENSPPYG00000017613 I 0.778
GLI3 Procavia capensis ENSPCAG00000015092 I 0.778
GLI3 Ornithorhynchus anatinus ENSOANG00000010699 I 0.778
GLI3 Macaca mulatta ENSMMUG00000013614 I 0.778
ENSMEUG00000013134 Macropus eugenii ENSMEUG00000013134 I 0.778
GLI3 Loxodonta africana ENSLAFG00000008944 I 0.778
GLI3 Meleagris gallopavo ENSMGAG00000012277 I 0.778
GLI3 Myotis lucifugus ENSMLUG00000015711 I 0.778
GLI3 Monodelphis domestica ENSMODG00000002714 I 0.778
ENSPSIG00000017804 Pelodiscus sinensis ENSPSIG00000017804 I 0.778
ENSMPUG00000018143 Mustela putorius furo ENSMPUG00000018143 I 0.778
ENSSHAG00000009727 Sarcophilus harrisii ENSSHAG00000009727 I 0.778
Gfo_R007869 Geospiza fortis Gfo_R007869 I 0.778
ENSP00000379258 Macaca fascicularis ENSP00000379258 I 0.778
Cmyd_10007839 Chelonia mydas Cmyd_10007839 I 0.778
Pvit_19093 Pogona vitticeps Pvit_19093 I 0.778
gli3.L Xenopus laevis XB-GENE-865509 I 0.778
XP_002933450 Xenopus tropicalis XP_002933450 I 0.778
XP_002933449 Xenopus tropicalis XP_002933449 I 0.778
Brh_R008256 Buceros rhinoceros Brh_R008256 I 0.778
Afo_R007816 Aptenodytes forsteri Afo_R007816 I 0.778
ENSLACG00000017364 Latimeria chalumnae ENSLACG00000017364 I 0.778
GLI3 Pteropus vampyrus ENSPVAG00000015920 I 0.778
GLI3 Tupaia belangeri ENSTBEG00000006673 I 0.778
ENSTSYG00000009406 Tarsius syrichta ENSTSYG00000009406 I 0.778
Aan_R014715 Calypte anna Aan_R014715 I 0.778
GLI3 Tursiops truncatus ENSTTRG00000003628 I 0.778
GLI3 Pan troglodytes ENSPTRG00000019117 I 0.778
ENSNLEG00000003160 Nomascus leucogenys ENSNLEG00000003160 I 0.778
GLI3 Callithrix jacchus ENSCJAG00000007690 I 0.778
GLI3 Dasypus novemcinctus ENSDNOG00000049286 I 0.778
GLI3 Equus caballus ENSECAG00000009281 I 0.778
ENSFALG00000005113 Ficedula albicollis ENSFALG00000005113 I 0.778
GLI3 Choloepus hoffmanni ENSCHOG00000003774 I 0.778
GLI3 Canis familiaris ENSCAFG00000003535 I 0.778
GLI3 Anolis carolinensis ENSACAG00000017547 I 0.778
ENSAMEG00000008405 Ailuropoda melanoleuca ENSAMEG00000008405 I 0.778
ENSAPLG00000004361 Anas platyrhynchos ENSAPLG00000004361 I 0.778
GLI3 Bos taurus ENSBTAG00000010671 I 0.778
GLI3 Felis catus ENSFCAG00000011989 I 0.778
ENSCSAG00000015361 Chlorocebus sabaeus ENSCSAG00000015361 I 0.778
GLI3 Homo sapiens ENSG00000106571 D 0.778
ENSGALG00000012329 Gallus gallus ENSGALG00000012329 I 0.778
GLI3 Gorilla gorilla ENSGGOG00000002026 I 0.778
ENSAPLG00000005128 Anas platyrhynchos ENSAPLG00000005128 I 0.776
Gfo_R013682 Geospiza fortis Gfo_R013682 I 0.776
Tal_R009020 Tyto alba Tal_R009020 I 0.776
gli3 Danio rerio ENSDARG00000052131 I 0.775
ENSAMXG00000002477 Astyanax mexicanus ENSAMXG00000002477 I 0.775
gli1 Danio rerio ENSDARG00000101244 I 0.774
ENSXMAG00000006443 Xiphophorus maculatus ENSXMAG00000006443 I 0.773
Cmyd_10009086 Chelonia mydas Cmyd_10009086 I 0.773
Aan_R003640 Calypte anna Aan_R003640 I 0.773
Afo_R006826 Aptenodytes forsteri Afo_R006826 I 0.773
ENSPSIG00000008752 Pelodiscus sinensis ENSPSIG00000008752 I 0.773
Gfo_R001212 Geospiza fortis Gfo_R001212 I 0.773
ENSPFOG00000005116 Poecilia formosa ENSPFOG00000005116 I 0.773
ENSAPLG00000015141 Anas platyrhynchos ENSAPLG00000015141 I 0.773
Brh_R010932 Buceros rhinoceros Brh_R010932 I 0.773
Tal_R006208 Tyto alba Tal_R006208 I 0.773
ENSFALG00000013217 Ficedula albicollis ENSFALG00000013217 I 0.773
GLI2 Taeniopygia guttata ENSTGUG00000004599 I 0.773
GLI2 Gallus gallus ENSGALG00000011630 I 0.773
GLI2 Meleagris gallopavo ENSMGAG00000011872 I 0.773
gli2b Takifugu rubripes ENSTRUG00000010444 I 0.771
gli2b Danio rerio ENSDARG00000020884 I 0.771
Pvit_06470 Pogona vitticeps Pvit_06470 I 0.771
ENSAMXG00000003125 Astyanax mexicanus ENSAMXG00000003125 I 0.771
Ogr02489 Ophisaurus gracilis Ogr02489 I 0.771
ENSAMXG00000006646 Astyanax mexicanus ENSAMXG00000006646 I 0.771
GLI2 Anolis carolinensis ENSACAG00000004133 I 0.771
ENSLOCG00000011983 Lepisosteus oculatus ENSLOCG00000011983 I 0.768
ENSMGAG00000003540 Meleagris gallopavo ENSMGAG00000003540 I 0.767
ENSGALG00000014639 Gallus gallus ENSGALG00000014639 I 0.767
GLI2 Otolemur garnettii ENSOGAG00000032438 I 0.766
GLI2 Monodelphis domestica ENSMODG00000000245 I 0.763
ENSSHAG00000004233 Sarcophilus harrisii ENSSHAG00000004233 I 0.763
GLI3 Echinops telfairi ENSETEG00000003955 I 0.762
GLI3 Microcebus murinus ENSMICG00000010785 I 0.762
GLI2 Bos taurus ENSBTAG00000011682 I 0.761
Myotis_brandtii_Gli2_10019076 Myotis brandtii Myotis_brandtii_Gli2_10019076 I 0.761
ENSAMEG00000008708 Ailuropoda melanoleuca ENSAMEG00000008708 I 0.761
ENSP00000390436-D1 Bos grunniens ENSP00000390436-D1 I 0.761
ENSMMUP00000002494 Macaca fascicularis ENSMMUP00000002494 I 0.761
ENSSTOG00000004582 Ictidomys tridecemlineatus ENSSTOG00000004582 I 0.761
ENSOARG00000013052 Ovis aries ENSOARG00000013052 I 0.761
GLI2 Oryctolagus cuniculus ENSOCUG00000000638 I 0.761
GLI2 Dasypus novemcinctus ENSDNOG00000008730 I 0.761
ENSPANG00000024168 Papio anubis ENSPANG00000024168 I 0.761
GLI2 Homo sapiens ENSG00000074047 D 0.761
ENSNLEG00000000944 Nomascus leucogenys ENSNLEG00000000944 I 0.761
GLI2 Macaca mulatta ENSMMUG00000001868 I 0.761
ENSMPUG00000000986 Mustela putorius furo ENSMPUG00000000986 I 0.761
Gli2 Mus musculus ENSMUSG00000048402 D 0.761
ENSPPYG00000012778 Pongo abelii ENSPPYG00000012778 I 0.761
ENSCSAG00000016668 Chlorocebus sabaeus ENSCSAG00000016668 I 0.761
ENSCJAG00000013342 Callithrix jacchus ENSCJAG00000013342 I 0.761
GLI2 Sus scrofa ENSSSCG00000015733 I 0.761
GLI2 Felis catus ENSFCAG00000014531 I 0.761
gli2b Tetraodon nigroviridis ENSTNIG00000017828 I 0.761
GLI2 Canis familiaris ENSCAFG00000004821 I 0.761
Gli2 Rattus norvegicus ENSRNOG00000007261 I 0.761
GLI2 Cavia porcellus ENSCPOG00000015189 I 0.761
GLI2 Pan troglodytes ENSPTRG00000012413 I 0.761
GLI2 Procavia capensis ENSPCAG00000001704 I 0.759
gli2b Tetraodon nigroviridis ENSTNIG00000010251 I 0.759
GLI2 Gorilla gorilla ENSGGOG00000009653 I 0.757