CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gli2.S
(
Xenopus laevis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
XB-GENE-6251939
T145535_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Gli3
M01022_2.00
Mus musculus
NGACCACCCNN
NNGGGTGGTCN
PBM
Peterson et al.(2012)
Gli3
0.815
0.957
Gli3
M08023_2.00
Mus musculus
RGVCCACCCAS
STGGGTGGBCY
ChIP-seq
Chen et al.(2011)
GSE11062_Gli3
0.815
0.957
Gli3
M09512_2.00
Mus musculus
RGACCACCCASR
YSTGGGTGGTCY
Misc
Heinz et al.(2010)
Limb-GLI3_GSE11077
0.815
0.957
Gli2
M01024_2.00
Mus musculus
NGACCACCYN
NRGGTGGTCN
PBM
Peterson et al.(2012)
Gli2
0.771
0.939
GLI2
M02875_2.00
Homo sapiens
GMCCACMCANVNHB
VDNBNTGKGTGGKC
SELEX
Jolma et al.(2013)
GLI2_1
0.771
0.939
GLI2
M02876_2.00
Homo sapiens
GCGACCACVCWR
YWGBGTGGTCGC
SELEX
Jolma et al.(2013)
GLI2_2
0.771
0.939
GLI2
M02732_2.00
Homo sapiens
GACCACMCAN
NTGKGTGGTC
SELEX
Jolma et al.(2010)
GLI2_monomer
0.771
0.939
GLI2
M04402_2.00
Homo sapiens
VGACCACCCACVDHG
CDHBGTGGGTGGTCB
SELEX
Yin et al.(2017)
GLI2_eDBD_HT-SELEX
0.771
0.939
GLI2
M02641_2.00
Homo sapiens
GACCACCCAHG
CDTGGGTGGTC
SELEX
Hallikas et al.(2006)
GLI2
0.771
0.939
GLI2
M10114_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI2_Q3
0.771
0.939
GLI2
M10115_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI2_Q6
0.771
0.939
GLI2
M04403_2.00
Homo sapiens
RGACCACCCACVWWG
CWWBGTGGGTGGTCY
SELEX
Yin et al.(2017)
GLI2_eDBD_Methyl-HT-SELEX
0.771
0.939
GLI3
M04416_2.00
Homo sapiens
VGACCACCCACVNHG
CDNBGTGGGTGGTCB
SELEX
Yin et al.(2017)
GLI3_eDBD_HT-SELEX
0.769
0.948
GLI3
M02642_2.00
Homo sapiens
GACCACCCANK
MNTGGGTGGTC
SELEX
Hallikas et al.(2006)
GLI3
0.769
0.948
GLI3
M08875_2.00
Homo sapiens
VRACCACCCAV
BTGGGTGGTYB
Misc
Kulakovskiy et al.(2013)
GLI3_HUMAN.H11MO.0.B
0.769
0.948
GLI3
M10167_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI3_01
0.769
0.948
GLI3
M10168_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI3_Q5_01
0.769
0.948
GLI3
M04417_2.00
Homo sapiens
CWHBGTGGGTGGTCY
RGACCACCCACVDWG
SELEX
Yin et al.(2017)
GLI3_eDBD_Methyl-HT-SELEX
0.769
0.948
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAD28180
C2H2 ZF
287
312
TNCHWDGCSKEFDTQDQLVHHINNDH
AAD28180
C2H2 ZF
320
347
FVCRWQECSREQKPFKAQYMLVVHMRRH
AAD28180
C2H2 ZF
353
377
HKCTFEGCFKAYSRLENLKTHLRSH
AAD28180
C2H2 ZF
383
408
YVCEHEGCNKAFSNASDRAKHQNRTH
AAD28180
C2H2 ZF
414
439
YICKIPGCTKRYTDPSSLRKHVKTVH
Links
Other
C2H2 ZF
family TFs
Other
Xenopus laevis
TFs
138 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
gli2.L
Xenopus laevis
XB-GENE-17342592
I
0.823
Gli3
Mus musculus
ENSMUSG00000021318
D
0.815
GLI3
Cavia porcellus
ENSCPOG00000013233
I
0.815
Gli3
Rattus norvegicus
ENSRNOG00000014395
I
0.815
ENSSTOG00000020844
Ictidomys tridecemlineatus
ENSSTOG00000020844
I
0.815
ENSGMOG00000007975
Gadus morhua
ENSGMOG00000007975
I
0.813
gli1
Gasterosteus aculeatus
ENSGACG00000006458
I
0.813
gli1
Takifugu rubripes
ENSTRUG00000014998
I
0.813
ENSONIG00000004472
Oreochromis niloticus
ENSONIG00000004472
I
0.812
ENSLOCG00000002028
Lepisosteus oculatus
ENSLOCG00000002028
I
0.812
ENSONIG00000005084
Oreochromis niloticus
ENSONIG00000005084
I
0.811
gli1
Oryzias latipes
ENSORLG00000005455
I
0.811
ENSPFOG00000006269
Poecilia formosa
ENSPFOG00000006269
I
0.811
ENSXMAG00000017965
Xiphophorus maculatus
ENSXMAG00000017965
I
0.811
ENSONIG00000003608
Oreochromis niloticus
ENSONIG00000003608
I
0.810
gli1
Tetraodon nigroviridis
ENSTNIG00000007058
I
0.810
ENSPFOG00000014778
Poecilia formosa
ENSPFOG00000014778
I
0.809
ENSGMOG00000010335
Gadus morhua
ENSGMOG00000010335
I
0.809
gli2a
Danio rerio
ENSDARG00000025641
I
0.808
fgenesh2_pg.scaffold_169000072
Branchiostoma floridae
fgenesh2_pg.scaffold_169000072
I
0.804
fgenesh2_pg.scaffold_137000068
Branchiostoma floridae
fgenesh2_pg.scaffold_137000068
I
0.804
gli2b
Takifugu rubripes
ENSTRUG00000001954
I
0.803
gli2b
Gasterosteus aculeatus
ENSGACG00000001547
I
0.803
ENSLOCG00000011983
Lepisosteus oculatus
ENSLOCG00000011983
I
0.778
GLI2
Otolemur garnettii
ENSOGAG00000032438
I
0.776
ENSMGAG00000003540
Meleagris gallopavo
ENSMGAG00000003540
I
0.774
ENSGALG00000014639
Gallus gallus
ENSGALG00000014639
I
0.774
gli1
Danio rerio
ENSDARG00000101244
I
0.774
GLI2
Monodelphis domestica
ENSMODG00000000245
I
0.773
ENSSHAG00000004233
Sarcophilus harrisii
ENSSHAG00000004233
I
0.773
GLI2
Macaca mulatta
ENSMMUG00000001868
I
0.771
GLI2
Pan troglodytes
ENSPTRG00000012413
I
0.771
GLI2
Bos taurus
ENSBTAG00000011682
I
0.771
ENSP00000390436-D1
Bos grunniens
ENSP00000390436-D1
I
0.771
ENSMPUG00000000986
Mustela putorius furo
ENSMPUG00000000986
I
0.771
ENSPANG00000024168
Papio anubis
ENSPANG00000024168
I
0.771
GLI2
Oryctolagus cuniculus
ENSOCUG00000000638
I
0.771
ENSAMEG00000008708
Ailuropoda melanoleuca
ENSAMEG00000008708
I
0.771
ENSOARG00000013052
Ovis aries
ENSOARG00000013052
I
0.771
ENSNLEG00000000944
Nomascus leucogenys
ENSNLEG00000000944
I
0.771
ENSMMUP00000002494
Macaca fascicularis
ENSMMUP00000002494
I
0.771
Myotis_brandtii_Gli2_10019076
Myotis brandtii
Myotis_brandtii_Gli2_10019076
I
0.771
Gli2
Mus musculus
ENSMUSG00000048402
D
0.771
ENSPPYG00000012778
Pongo abelii
ENSPPYG00000012778
I
0.771
Gli2
Rattus norvegicus
ENSRNOG00000007261
I
0.771
ENSCSAG00000016668
Chlorocebus sabaeus
ENSCSAG00000016668
I
0.771
gli3
Danio rerio
ENSDARG00000052131
I
0.771
GLI2
Dasypus novemcinctus
ENSDNOG00000008730
I
0.771
GLI2
Felis catus
ENSFCAG00000014531
I
0.771
GLI2
Homo sapiens
ENSG00000074047
D
0.771
GLI2
Canis familiaris
ENSCAFG00000004821
I
0.771
GLI2
Sus scrofa
ENSSSCG00000015733
I
0.771
GLI2
Cavia porcellus
ENSCPOG00000015189
I
0.771
ENSSTOG00000004582
Ictidomys tridecemlineatus
ENSSTOG00000004582
I
0.771
ENSCJAG00000013342
Callithrix jacchus
ENSCJAG00000013342
I
0.771
Pvit_19093
Pogona vitticeps
Pvit_19093
I
0.769
GLI3
Procavia capensis
ENSPCAG00000015092
I
0.769
ENSPANG00000014545
Papio anubis
ENSPANG00000014545
I
0.769
XP_002933449
Xenopus tropicalis
XP_002933449
I
0.769
XP_002933450
Xenopus tropicalis
XP_002933450
I
0.769
gli3.L
Xenopus laevis
XB-GENE-865509
I
0.769
ENSTSYG00000009406
Tarsius syrichta
ENSTSYG00000009406
I
0.769
Afo_R007816
Aptenodytes forsteri
Afo_R007816
I
0.769
GLI3
Tursiops truncatus
ENSTTRG00000003628
I
0.769
Brh_R008256
Buceros rhinoceros
Brh_R008256
I
0.769
Cmyd_10007839
Chelonia mydas
Cmyd_10007839
I
0.769
GLI3
Pteropus vampyrus
ENSPVAG00000015920
I
0.769
Aan_R014715
Calypte anna
Aan_R014715
I
0.769
ENSP00000379258
Macaca fascicularis
ENSP00000379258
I
0.769
GLI3
Pan troglodytes
ENSPTRG00000019117
I
0.769
GLI3
Ochotona princeps
ENSOPRG00000011225
I
0.769
ENSSHAG00000009727
Sarcophilus harrisii
ENSSHAG00000009727
I
0.769
ENSPPYG00000017613
Pongo abelii
ENSPPYG00000017613
I
0.769
GLI3
Tupaia belangeri
ENSTBEG00000006673
I
0.769
ENSPSIG00000017804
Pelodiscus sinensis
ENSPSIG00000017804
I
0.769
Gfo_R007869
Geospiza fortis
Gfo_R007869
I
0.769
ENSOARG00000017420
Ovis aries
ENSOARG00000017420
I
0.769
ENSAMEG00000008405
Ailuropoda melanoleuca
ENSAMEG00000008405
I
0.769
GLI3
Equus caballus
ENSECAG00000009281
I
0.769
GLI3
Otolemur garnettii
ENSOGAG00000012651
I
0.769
GLI3
Felis catus
ENSFCAG00000011989
I
0.769
GLI3
Homo sapiens
ENSG00000106571
D
0.769
GLI3
Gorilla gorilla
ENSGGOG00000002026
I
0.769
ENSGALG00000012329
Gallus gallus
ENSGALG00000012329
I
0.769
GLI3
Anolis carolinensis
ENSACAG00000017547
I
0.769
GLI3
Dasypus novemcinctus
ENSDNOG00000049286
I
0.769
GLI3
Bos taurus
ENSBTAG00000010671
I
0.769
ENSAPLG00000004361
Anas platyrhynchos
ENSAPLG00000004361
I
0.769
ENSAMXG00000002477
Astyanax mexicanus
ENSAMXG00000002477
I
0.769
GLI3
Canis familiaris
ENSCAFG00000003535
I
0.769
GLI3
Choloepus hoffmanni
ENSCHOG00000003774
I
0.769
ENSCSAG00000015361
Chlorocebus sabaeus
ENSCSAG00000015361
I
0.769
GLI3
Callithrix jacchus
ENSCJAG00000007690
I
0.769
ENSLACG00000017364
Latimeria chalumnae
ENSLACG00000017364
I
0.769
ENSFALG00000005113
Ficedula albicollis
ENSFALG00000005113
I
0.769
GLI3
Macaca mulatta
ENSMMUG00000013614
I
0.769
GLI3
Myotis lucifugus
ENSMLUG00000015711
I
0.769
GLI3
Monodelphis domestica
ENSMODG00000002714
I
0.769
ENSNLEG00000003160
Nomascus leucogenys
ENSNLEG00000003160
I
0.769
GLI3
Oryctolagus cuniculus
ENSOCUG00000006563
I
0.769
GLI3
Ornithorhynchus anatinus
ENSOANG00000010699
I
0.769
GLI3
Meleagris gallopavo
ENSMGAG00000012277
I
0.769
ENSMPUG00000018143
Mustela putorius furo
ENSMPUG00000018143
I
0.769
ENSMEUG00000013134
Macropus eugenii
ENSMEUG00000013134
I
0.769
GLI3
Loxodonta africana
ENSLAFG00000008944
I
0.769
GLI2
Procavia capensis
ENSPCAG00000001704
I
0.768
Pvit_05813
Pogona vitticeps
Pvit_05813
I
0.767
GLI2
Gorilla gorilla
ENSGGOG00000009653
I
0.767
GLI1
Anolis carolinensis
ENSACAG00000006541
I
0.767
Pvit_06470
Pogona vitticeps
Pvit_06470
I
0.766
GLI2
Anolis carolinensis
ENSACAG00000004133
I
0.766
Ogr02489
Ophisaurus gracilis
Ogr02489
I
0.766
gli2b
Danio rerio
ENSDARG00000020884
I
0.766
gli2b
Takifugu rubripes
ENSTRUG00000010444
I
0.766
ENSAMXG00000003125
Astyanax mexicanus
ENSAMXG00000003125
I
0.766
ENSAMXG00000006646
Astyanax mexicanus
ENSAMXG00000006646
I
0.766
Gfo_R013682
Geospiza fortis
Gfo_R013682
I
0.765
Tal_R009020
Tyto alba
Tal_R009020
I
0.765
ENSAPLG00000005128
Anas platyrhynchos
ENSAPLG00000005128
I
0.765
Gfo_R001212
Geospiza fortis
Gfo_R001212
I
0.764
Tal_R006208
Tyto alba
Tal_R006208
I
0.764
ENSAMXG00000017236
Astyanax mexicanus
ENSAMXG00000017236
I
0.764
Cmyd_10009086
Chelonia mydas
Cmyd_10009086
I
0.764
Aan_R003640
Calypte anna
Aan_R003640
I
0.764
GLI2
Taeniopygia guttata
ENSTGUG00000004599
I
0.764
ENSPSIG00000008752
Pelodiscus sinensis
ENSPSIG00000008752
I
0.764
GLI2
Meleagris gallopavo
ENSMGAG00000011872
I
0.764
Afo_R006826
Aptenodytes forsteri
Afo_R006826
I
0.764
GLI2
Gallus gallus
ENSGALG00000011630
I
0.764
ENSLOCG00000005938
Lepisosteus oculatus
ENSLOCG00000005938
I
0.764
ENSAPLG00000015141
Anas platyrhynchos
ENSAPLG00000015141
I
0.764
Brh_R010932
Buceros rhinoceros
Brh_R010932
I
0.764
ENSFALG00000013217
Ficedula albicollis
ENSFALG00000013217
I
0.764
ENSXMAG00000006443
Xiphophorus maculatus
ENSXMAG00000006443
I
0.763
ENSPFOG00000005116
Poecilia formosa
ENSPFOG00000005116
I
0.763
GLI2
Tursiops truncatus
ENSTTRG00000002058
I
0.762
ENSECAG00000008016
Equus caballus
ENSECAG00000008016
I
0.761
gli2b
Tetraodon nigroviridis
ENSTNIG00000017828
I
0.757