prdm1.S (Xenopus laevis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 XB-GENE-853257 T145589_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
AAF08791 C2H2 ZF 531 553
AAF08791 C2H2 ZF 559 581
AAF08791 C2H2 ZF 587 609
AAF08791 C2H2 ZF 615 637
AAH44261 C2H2 ZF 531 553
AAH44261 C2H2 ZF 559 581
AAH44261 C2H2 ZF 587 609
AAH44261 C2H2 ZF 615 637
AAH60348 C2H2 ZF 531 553
AAH60348 C2H2 ZF 559 581
AAH60348 C2H2 ZF 587 609
AAH60348 C2H2 ZF 615 637

Links

Other C2H2 ZF family TFs
Other Xenopus laevis TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSGALG00000015388 Gallus gallus ENSGALG00000015388 N 0.824
ENSLOCG00000016531 Lepisosteus oculatus ENSLOCG00000016531 N 0.824
Afo_R003683 Aptenodytes forsteri Afo_R003683 N 0.824
PRDM1 Taeniopygia guttata ENSTGUG00000012204 N 0.824
PRDM1 Meleagris gallopavo ENSMGAG00000013524 N 0.824
ENSGMOG00000009730 Gadus morhua ENSGMOG00000009730 N 0.824
XP_002937203 Xenopus tropicalis XP_002937203 N 0.824
ENSAPLG00000013593 Anas platyrhynchos ENSAPLG00000013593 N 0.824
ENSFALG00000011624 Ficedula albicollis ENSFALG00000011624 N 0.824
PRDM1 Anolis carolinensis ENSACAG00000005496 N 0.822
ENSGACG00000009358 Gasterosteus aculeatus ENSGACG00000009358 N 0.822
Ogr18550 Ophisaurus gracilis Ogr18550 N 0.822
Pvit_09291 Pogona vitticeps Pvit_09291 N 0.822
PRDM1 Bos taurus ENSBTAG00000000816 N 0.821
prdm1a Danio rerio ENSDARG00000002445 N 0.821
ENSBTAP00000001081-D1 Bos grunniens ENSBTAP00000001081-D1 N 0.821
ENSOARG00000011272 Ovis aries ENSOARG00000011272 N 0.821
Gfo_R012197 Geospiza fortis Gfo_R012197 N 0.814
prdm1 Takifugu rubripes ENSTRUG00000000404 N 0.812
prdm1a Oryzias latipes ENSORLG00000015684 N 0.812
prdm1a Gasterosteus aculeatus ENSGACG00000001740 N 0.812
ENSONIG00000006687 Oreochromis niloticus ENSONIG00000006687 N 0.812
estExt_fgenesh2_pg.C_440063 Branchiostoma floridae estExt_fgenesh2_pg.C_440063 N 0.806
estExt_fgenesh2_pg.C_440053 Branchiostoma floridae estExt_fgenesh2_pg.C_440053 N 0.806
ENSTRUG00000007847 Takifugu rubripes ENSTRUG00000007847 N 0.801
GL12308 Drosophila persimilis FBgn0149915 N 0.781
ENSGMOG00000010670 Gadus morhua ENSGMOG00000010670 N 0.780
Alligator_sinensis_CCG010969.1 Alligator sinensis Alligator_sinensis_CCG010969.1 N 0.779
ENSXMAG00000003417 Xiphophorus maculatus ENSXMAG00000003417 N 0.767
ENSPFOG00000019374 Poecilia formosa ENSPFOG00000019374 N 0.767
EEL_0000388201 Elaeophora elaphi EEL_0000388201 N 0.767
ENSORLG00000012948 Oryzias latipes ENSORLG00000012948 N 0.767
ENSOARG00000004628 Ovis aries ENSOARG00000004628 N 0.765
ZNF683 Dasypus novemcinctus ENSDNOG00000043822 N 0.758