prdm6 (Xenopus tropicalis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 XB-GENE-854907 T145598_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PRDM6
M08277_2.00
Homo sapiens
TTTTYYWBHHTTTYYHYTBYN

NRVARDRRAAADDVWRRAAAA
ChIP-seq
Schmitges et al.(2016)
Q9NQX0.MEME
0.827 0.989
PRDM6
M08855_2.00
Homo sapiens
NNKTTTTCYYBYB

VRVRRGAAAAMNN
Misc
Kulakovskiy et al.(2013)
PRDM6_HUMAN.H11MO.0.C
0.827 0.989
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002931772 C2H2 ZF 419 440
XP_002931772 C2H2 ZF 447 469
XP_002931772 C2H2 ZF 475 497
XP_002931772 C2H2 ZF 503 524

Links

Other C2H2 ZF family TFs
Other Xenopus tropicalis TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F443_08413 Phytophthora parasitica F443_08413 N 0.000
maker-pag1_scaffold_848-fgenesh-gene-0.0 Pythium aphanidermatum maker-pag1_scaffold_848-fgenesh-gene-0.0 N 0.000
maker-pir_contig_469-fgenesh-gene-0.0 Pythium irregulare maker-pir_contig_469-fgenesh-gene-0.0 N 0.000
PITG_10048 Phytophthora infestans PITG_10048 N 0.000