prdm6 (Xenopus tropicalis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 XB-GENE-854907 T145598_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PRDM6
M08277_2.00
Homo sapiens
TTTTYYWBHHTTTYYHYTBYN

NRVARDRRAAADDVWRRAAAA
ChIP-seq
Schmitges et al.(2016)
Q9NQX0.MEME
0.827 0.989
PRDM6
M08855_2.00
Homo sapiens
NNKTTTTCYYBYB

VRVRRGAAAAMNN
Misc
Kulakovskiy et al.(2013)
PRDM6_HUMAN.H11MO.0.C
0.827 0.989
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002931772 C2H2 ZF 419 440
XP_002931772 C2H2 ZF 447 469
XP_002931772 C2H2 ZF 475 497
XP_002931772 C2H2 ZF 503 524

Links

Other C2H2 ZF family TFs
Other Xenopus tropicalis TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Alligator_sinensis_CCG004791.1 Alligator sinensis Alligator_sinensis_CCG004791.1 I 0.827
ENSAMEG00000015711 Ailuropoda melanoleuca ENSAMEG00000015711 I 0.827
ENSAMXG00000012588 Astyanax mexicanus ENSAMXG00000012588 I 0.827
ENSBTAP00000027421-D1 Bos grunniens ENSBTAP00000027421-D1 I 0.827
ENSCPOG00000004258 Cavia porcellus ENSCPOG00000004258 I 0.827
ENSCSAG00000014599 Chlorocebus sabaeus ENSCSAG00000014599 I 0.827
ENSFALG00000007522 Ficedula albicollis ENSFALG00000007522 I 0.827
ENSLOCG00000008663 Lepisosteus oculatus ENSLOCG00000008663 I 0.827
ENSMEUG00000011470 Macropus eugenii ENSMEUG00000011470 I 0.827
ENSMICG00000007754 Microcebus murinus ENSMICG00000007754 I 0.827
ENSMMUG00000010652 Macaca mulatta ENSMMUG00000010652 I 0.827
ENSMPUG00000012965 Mustela putorius furo ENSMPUG00000012965 I 0.827
ENSNLEG00000012064 Nomascus leucogenys ENSNLEG00000012064 I 0.827
ENSOANG00000001527 Ornithorhynchus anatinus ENSOANG00000001527 I 0.827
ENSOARG00000018873 Ovis aries ENSOARG00000018873 I 0.827
ENSONIG00000013818 Oreochromis niloticus ENSONIG00000013818 I 0.818
ENSORLG00000017089 Oryzias latipes ENSORLG00000017089 I 0.818
ENSP00000261364 Macaca fascicularis ENSP00000261364 I 0.827
ENSPANG00000020936 Papio anubis ENSPANG00000020936 I 0.827
ENSPFOG00000000918 Poecilia formosa ENSPFOG00000000918 I 0.818
ENSPSIG00000007714 Pelodiscus sinensis ENSPSIG00000007714 I 0.827
ENSSHAG00000009542 Sarcophilus harrisii ENSSHAG00000009542 I 0.827
ENSTNIG00000004450 Tetraodon nigroviridis ENSTNIG00000004450 I 0.762
ENSTSYG00000009407 Tarsius syrichta ENSTSYG00000009407 I 0.827
Myotis_brandtii_PRDM6_10015768 Myotis brandtii Myotis_brandtii_PRDM6_10015768 I 0.827
Ogr18847 Ophisaurus gracilis Ogr18847 I 0.827
PRDM6 Tursiops truncatus ENSTTRG00000006808 I 0.827
PRDM6 Pan troglodytes ENSPTRG00000017180 I 0.827
PRDM6 Pteropus vampyrus ENSPVAG00000006781 I 0.827
PRDM6 Takifugu rubripes ENSTRUG00000011582 I 0.762
Prdm6 Rattus norvegicus ENSRNOG00000030486 I 0.827
PRDM6 Tupaia belangeri ENSTBEG00000010088 I 0.827
PRDM6 Sus scrofa ENSSSCG00000014238 I 0.827
PRDM6 Ochotona princeps ENSOPRG00000004020 I 0.827
PRDM6 Bos taurus ENSBTAG00000020578 I 0.827
PRDM6 Canis familiaris ENSCAFG00000023666 I 0.827
PRDM6 Choloepus hoffmanni ENSCHOG00000003085 I 0.827
PRDM6 Dasypus novemcinctus ENSDNOG00000006337 I 0.827
PRDM6 Equus caballus ENSECAG00000004532 I 0.827
PRDM6 Erinaceus europaeus ENSEEUG00000005543 I 0.827
PRDM6 Anolis carolinensis ENSACAG00000003401 I 0.827
PRDM6 Felis catus ENSFCAG00000026249 I 0.827
PRDM6 Homo sapiens ENSG00000061455 D 0.827
PRDM6 Gallus gallus ENSGALG00000005351 I 0.827
PRDM6 Loxodonta africana ENSLAFG00000000396 I 0.827
PRDM6 Myotis lucifugus ENSMLUG00000010064 I 0.827
PRDM6 Monodelphis domestica ENSMODG00000013415 I 0.827
Prdm6 Mus musculus ENSMUSG00000069378 I 0.827
PRDM6 Callithrix jacchus ENSCJAG00000017318 I 0.827
PRDM6 Oryctolagus cuniculus ENSOCUG00000003454 I 0.827
Pvit_11059 Pogona vitticeps Pvit_11059 I 0.827