CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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snai2.S
(
Xenopus laevis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
XB-GENE-865699
T145616_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SNAI2
M00221_2.00
Homo sapiens
HACYTGH
DCARGTD
PBM
Barrera et al.(2016)
SNAI2_REF
0.825
0.974
SNAI2
M02873_2.00
Homo sapiens
VCACCTGYN
NRCAGGTGB
SELEX
Jolma et al.(2013)
SNAI2_1
0.825
0.974
SNAI2
M04392_2.00
Homo sapiens
YGCACCTGYY
RRCAGGTGCR
SELEX
Yin et al.(2017)
SNAI2_eDBD_HT-SELEX
0.825
0.974
SNAI2
M04394_2.00
Homo sapiens
YRCACCTGYY
RRCAGGTGYR
SELEX
Yin et al.(2017)
SNAI2_FL_HT-SELEX
0.825
0.974
SNAI2
M08853_2.00
Homo sapiens
NVCACCTGYY
RRCAGGTGBN
Misc
Kulakovskiy et al.(2013)
SNAI2_HUMAN.H11MO.0.A
0.816
0.965
Snai2
M08973_2.00
Mus musculus
VNRCACCTGYY
RRCAGGTGYNB
Misc
Kulakovskiy et al.(2013)
SNAI2_MOUSE.H11MO.0.A
0.816
0.965
SNAI2
M10102_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SLUG_Q6_01
0.825
0.974
SNAI2
M10103_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SLUG_Q6_02
0.825
0.974
SNAI2
M10104_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SLUG_Q6
0.825
0.974
SNAI2
M00220_2.00
Homo sapiens
NHACCTGY
RCAGGTDN
PBM
Barrera et al.(2016)
SNAI2_D119E
0.825
0.974
SNAI2
M04393_2.00
Homo sapiens
YRCACCTGYN
NRCAGGTGYR
SELEX
Yin et al.(2017)
SNAI2_eDBD_Methyl-HT-SELEX
0.825
0.974
SNAI2
M04395_2.00
Homo sapiens
YRCACCTGYN
NRCAGGTGYR
SELEX
Yin et al.(2017)
SNAI2_FL_Methyl-HT-SELEX
0.825
0.974
SNAI2
M00222_2.00
Homo sapiens
HACYTGHNNN
NNNDCARGTD
PBM
Barrera et al.(2016)
SNAI2_T234I
0.812
0.956
esg
M06050_2.00
Drosophila melanogaster
CACCTGH
DCAGGTG
B1H
Zhu et al.(2011)
esg_SANGER_2.5_FBgn0001981
0.767
0.807
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAH72087
C2H2 ZF
126
148
FQCSLCSKTYSTFSGLAKHKQLH
AAH72087
C2H2 ZF
157
179
FSCKYCEKEYVSLGALKMHIRTH
AAH72087
C2H2 ZF
183
205
CICKICGKAFSRPWLLQGHIRTH
AAH72087
C2H2 ZF
211
233
FSCPHCNRAFADRSNLRAHLQTH
AAH72087
C2H2 ZF
239
260
YQCKNCSKTFSRMSLLHKHEES
AAI58209
C2H2 ZF
126
148
FQCSLCSKTYSTFSGLAKHKQLH
AAI58209
C2H2 ZF
157
179
FSCKYCEKEYVSLGALKMHIRTH
AAI58209
C2H2 ZF
183
205
CVCKICGKAFSRPWLLQGHIRTH
AAI58209
C2H2 ZF
211
233
FSCPHCNRAFADRSNLRAHLQTH
AAI58209
C2H2 ZF
239
260
YQCKNCSKTFSRMSLLHKHEES
AAK54140
C2H2 ZF
126
148
FQCSLCSKTYSTFSGLAKHKQLH
AAK54140
C2H2 ZF
157
179
FSCKYCEKEYVSLGALKMHIRTH
AAK54140
C2H2 ZF
183
205
CVCKICGKAFSRPWLLQGHIRTH
AAK54140
C2H2 ZF
211
233
FSCPHCNRAFADRSNLRAHLQTH
AAK54140
C2H2 ZF
239
260
YQCKNCSKTFSRMSLLHKHEES
Links
Other
C2H2 ZF
family TFs
Other
Xenopus laevis
TFs
103 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy