trerf1 (Xenopus tropicalis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 XB-GENE-940630 T145633_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002934726 C2H2 ZF 482 504
XP_002934726 C2H2 ZF 959 983
XP_002934726 C2H2 ZF 1031 1053

Links

Other C2H2 ZF family TFs
Other Xenopus tropicalis TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_26930 Aegilops tauschii F775_26930 N 0.000
AMTR_s00129p00111730 Amborella trichopoda AMTR_s00129p00111730 N 0.000
Aquca_020_00580 Aquilegia coerulea Aquca_020_00580 N 0.000
Aquca_013_00919 Aquilegia coerulea Aquca_013_00919 N 0.000
fgenesh2_kg.5__785__AT3G43240.1 Arabidopsis lyrata fgenesh2_kg.5__785__AT3G43240.1 N 0.000
ARID4 Arabidopsis thaliana AT3G43240 N 0.000
Bostr.0556s0671 Boechera stricta Bostr.0556s0671 N 0.000
BRADI3G37397 Brachypodium distachyon BRADI3G37397 N 0.000
BRADI3G37377 Brachypodium distachyon BRADI3G37377 N 0.000
BRADI4G31016 Brachypodium distachyon BRADI4G31016 N 0.000
Bo3g127310 Brassica oleracea Bo3g127310 N 0.000
Bra034957 Brassica rapa Bra034957 N 0.000
PK11738.1 Cannabis sativa PK11738.1 N 0.000
Cagra.4079s0001 Capsella grandiflora Cagra.4079s0001 N 0.000
Carubv10016730m.g Capsella rubella Carubv10016730m.g N 0.000
evm.TU.supercontig_82.51 Carica papaya evm.TU.supercontig_82.51 N 0.000
CHLREDRAFT_186244 Chlamydomonas reinhardtii CHLREDRAFT_186244 N 0.000
estExt_fgeneshCV_pg.C_50315 Chlorella vulgaris estExt_fgeneshCV_pg.C_50315 N 0.000
Ca_18326 Cicer arietinum Ca_18326 N 0.000
Ca_16182 Cicer arietinum Ca_16182 N 0.000
Cla012753 Citrullus lanatus Cla012753 N 0.000
Cla015761 Citrullus lanatus Cla015761 N 0.000
Ciclev10007563m.g Citrus clementina Ciclev10007563m.g N 0.000
orange1.1g004566m.g Citrus sinensis orange1.1g004566m.g N 0.000
estExt_fgenesh1_pg.C_50294 Coccomyxa subellipsoidea C169 estExt_fgenesh1_pg.C_50294 N 0.000
Cucsa.359860 Cucumis sativus Cucsa.359860 N 0.000
Cucsa.149260 Cucumis sativus Cucsa.149260 N 0.000
Eucgr.I02158 Eucalyptus grandis Eucgr.I02158 N 0.000
Eucgr.C00764 Eucalyptus grandis Eucgr.C00764 N 0.000
Thhalv10002415m.g Eutrema salsugineum Thhalv10002415m.g N 0.000
gene05453-v1.0-hybrid Fragaria vesca gene05453-v1.0-hybrid N 0.000
GLYMA16G01560 Glycine max GLYMA16G01560 N 0.000
GLYMA07G05050 Glycine max GLYMA07G05050 N 0.000
GLYMA15G20380 Glycine max GLYMA15G20380 N 0.000
GLYMA09G08690 Glycine max GLYMA09G08690 N 0.000
Gorai.009G038600 Gossypium raimondii Gorai.009G038600 N 0.000
Gorai.010G095800 Gossypium raimondii Gorai.010G095800 N 0.000
Gorai.001G018000 Gossypium raimondii Gorai.001G018000 N 0.000
MLOC_66426 Hordeum vulgare MLOC_66426 N 0.000
LPERR09G08040 Leersia perrieri LPERR09G08040 N 0.000
Lus10039924.g Linum usitatissimum Lus10039924.g N 0.000
Lus10027658.g Linum usitatissimum Lus10027658.g N 0.000
MDP0000233594 Malus domestica MDP0000233594 N 0.000
MDP0000214795 Malus domestica MDP0000214795 N 0.000
MDP0000310024 Malus domestica MDP0000310024 N 0.000
MDP0000244853 Malus domestica MDP0000244853 N 0.000
cassava33852.m1 Manihot esculenta cassava33852.m1 N 0.000
cassava32082.m1 Manihot esculenta cassava32082.m1 N 0.000
MTR_8g022980 Medicago truncatula MTR_8g022980 N 0.000
MTR_2g044550 Medicago truncatula MTR_2g044550 N 0.000
mgf013854m Mimulus guttatus mgf013854m N 0.000
GSMUA_Achr11G09250_001 Musa acuminata GSMUA_Achr11G09250_001 N 0.000
GSMUA_Achr10G18680_001 Musa acuminata GSMUA_Achr10G18680_001 N 0.000
GSMUA_Achr3G05790_001 Musa acuminata GSMUA_Achr3G05790_001 N 0.000
OBART09G11370 Oryza barthii OBART09G11370 N 0.000
OBART08G16790 Oryza barthii OBART08G16790 N 0.000
OB09G17930 Oryza brachyantha OB09G17930 N 0.000
ORGLA08G0146400 Oryza glaberrima ORGLA08G0146400 N 0.000
ORGLA09G0085300 Oryza glaberrima ORGLA09G0085300 N 0.000
OGLUM09G11760 Oryza glumaepatula OGLUM09G11760 N 0.000
OGLUM08G17510 Oryza glumaepatula OGLUM08G17510 N 0.000
BGIOSGA026888 Oryza indica BGIOSGA026888 N 0.000
BGIOSGA029700 Oryza indica BGIOSGA029700 N 0.000
OLONG_007387 Oryza longistaminata OLONG_007387 N 0.000
OMERI01G15670 Oryza meridionalis OMERI01G15670 N 0.000
ONIVA08G18320 Oryza nivara ONIVA08G18320 N 0.000
ONIVA09G11150 Oryza nivara ONIVA09G11150 N 0.000
OPUNC09G09840 Oryza punctata OPUNC09G09840 N 0.000
OPUNC08G14680 Oryza punctata OPUNC08G14680 N 0.000
ORUFI08G18650 Oryza rufipogon ORUFI08G18650 N 0.000
ORUFI09G12160 Oryza rufipogon ORUFI09G12160 N 0.000
OS08G0451400 Oryza sativa OS08G0451400 N 0.000
OSTLU_27261 Ostreococcus lucimarinus OSTLU_27261 N 0.000
OSTLU_94134 Ostreococcus lucimarinus OSTLU_94134 N 0.000
Pavir.Fb01510 Panicum virgatum Pavir.Fb01510 N 0.000
Pavir.Bb02255 Panicum virgatum Pavir.Bb02255 N 0.000
Pavir.Fa00815 Panicum virgatum Pavir.Fa00815 N 0.000
Pavir.J03302 Panicum virgatum Pavir.J03302 N 0.000
PDK_20s1329251g001 Phoenix dactylifera PDK_20s1329251g001 N 0.000
PDK_20s1317301g006 Phoenix dactylifera PDK_20s1317301g006 N 0.000
gw1.211.7.1 Physcomitrella patens gw1.211.7.1 N 0.000
e_gw1.53.164.1 Physcomitrella patens e_gw1.53.164.1 N 0.000
POPTR_0006s13780 Populus trichocarpa POPTR_0006s13780 N 0.000
POPTR_0018s07250 Populus trichocarpa POPTR_0018s07250 N 0.000
Pm013168 Prunus mume Pm013168 N 0.000
PRUPE_ppa001668mg Prunus persica PRUPE_ppa001668mg N 0.000
29739.m003683 Ricinus communis 29739.m003683 N 0.000
SapurV1A.0249s0150 Salix purpurea SapurV1A.0249s0150 N 0.000
SapurV1A.0121s0150 Salix purpurea SapurV1A.0121s0150 N 0.000
SELMODRAFT_431374 Selaginella moellendorffii SELMODRAFT_431374 N 0.000
SELMODRAFT_449331 Selaginella moellendorffii SELMODRAFT_449331 N 0.000
Si013293m.g Setaria italica Si013293m.g N 0.000
Si029019m.g Setaria italica Si029019m.g N 0.000
Solyc12g049570.1 Solanum lycopersicum Solyc12g049570.1 N 0.000
PGSC0003DMG400028852 Solanum tuberosum PGSC0003DMG400028852 N 0.000
Sb02g025515 Sorghum bicolor Sb02g025515 N 0.000
Sb07g022155 Sorghum bicolor Sb07g022155 N 0.000
TCM_037452 Theobroma cacao TCM_037452 N 0.000
Traes_5AL_0CF3E9D4A Triticum aestivum Traes_5AL_0CF3E9D4A N 0.000
Traes_5DL_E48356A5C Triticum aestivum Traes_5DL_E48356A5C N 0.000
Traes_5BL_114179614 Triticum aestivum Traes_5BL_114179614 N 0.000
TRIUR3_24005 Triticum urartu TRIUR3_24005 N 0.000
VIT_11s0016g00370 Vitis vinifera VIT_11s0016g00370 N 0.000
VIT_09s0002g00430 Vitis vinifera VIT_09s0002g00430 N 0.000
estExt_fgenesh5_synt.C_400033 Volvox carteri estExt_fgenesh5_synt.C_400033 N 0.000
GRMZM5G866423 Zea mays GRMZM5G866423 N 0.000
GRMZM2G138976 Zea mays GRMZM2G138976 N 0.000
GRMZM2G140156 Zea mays GRMZM2G140156 N 0.000