CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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bcl6
(
Xenopus tropicalis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
XB-GENE-984479
T145708_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BCL6
M00228_2.00
Homo sapiens
NNVNDVRANN
NNTYBHNBNN
PBM
Barrera et al.(2016)
BCL6_REF
0.787
0.971
BCL6
M04424_2.00
Homo sapiens
NYGCTTTCKAGGAAHN
NDTTCCTMGAAAGCRN
SELEX
Yin et al.(2017)
BCL6_eDBD_HT-SELEX_1
0.787
0.971
BCL6
M04425_2.00
Homo sapiens
NDTTCCTMGAWWRCVN
NBGYWWTCKAGGAAHN
SELEX
Yin et al.(2017)
BCL6_eDBD_HT-SELEX_2
0.787
0.971
Bcl6
M08097_2.00
Mus musculus
NDCYYTCYAGGAAN
NTTCCTRGARRGHN
ChIP-seq
Mathelier et al.(2014)
MA0463.1
0.787
0.971
Bcl6
M08024_2.00
Mus musculus
HYNBHHWBWSHTCHYNYYYYYYNBYYHYYH
DRRDRRVNRRRRRRNRDGADSWVWDDVNRD
ChIP-seq
Chen et al.(2011)
SRP001843_Bcl6_IgG_LPSstim
0.787
0.971
BCL6
M08877_2.00
Homo sapiens
NNMYYTCYAGGAA
TTCCTRGARRKNN
Misc
Kulakovskiy et al.(2013)
BCL6_HUMAN.H11MO.0.A
0.787
0.971
Bcl6
M08972_2.00
Mus musculus
NNMTYTCYAGGAA
TTCCTRGARAKNN
Misc
Kulakovskiy et al.(2013)
BCL6_MOUSE.H11MO.0.A
0.787
0.971
Bcl6
M09513_2.00
Mus musculus
NNNNYTTCYWGGAAN
NTTCCWRGAARNNNN
Misc
Heinz et al.(2010)
Liver-Bcl6_GSE31578
0.787
0.971
BCL6
M10180_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL6_01
0.787
0.971
BCL6
M10181_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL6_02
0.787
0.971
BCL6
M10182_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL6_Q3_01
0.787
0.971
BCL6
M10183_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL6_Q3
0.787
0.971
BCL6
M10184_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL6_Q6
0.787
0.971
BCL6
M04426_2.00
Homo sapiens
NTGCTTTCTAGGAAHN
NDTTCCTAGAAAGCAN
SELEX
Yin et al.(2017)
BCL6_eDBD_Methyl-HT-SELEX_1
0.787
0.971
BCL6
M04427_2.00
Homo sapiens
NDTTCCTMGAWWRCVN
NBGYWWTCKAGGAAHN
SELEX
Yin et al.(2017)
BCL6_eDBD_Methyl-HT-SELEX_2
0.787
0.971
BCL6
M00227_2.00
Homo sapiens
NTAATTRWNN
NNWYAATTAN
PBM
Barrera et al.(2016)
BCL6_H676Y
0.780
0.935
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAI61229
C2H2 ZF
513
536
FFCNECDSRFSEEGSLKRHMLQVH
AAI61229
C2H2 ZF
541
563
YKCDRCQASFRYKGNLASHKTVH
AAI61229
C2H2 ZF
569
591
YRCSICGAQFNRPANLKTHTRIH
AAI61229
C2H2 ZF
597
619
YKCETCGARFVQVAHLRAHVLIH
AAI61229
C2H2 ZF
625
647
YPCEICGTRFRHLQTLKSHLRIH
AAI61229
C2H2 ZF
653
676
YHCEKCNLHFRHKSQLRLHLRQKH
Links
Other
C2H2 ZF
family TFs
Other
Xenopus tropicalis
TFs
51 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy