XP_002937379 (Xenopus tropicalis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 XP_002937379 T145777_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Zic1
M00137_2.00
Mus musculus
NCMYVBNGNK

MNCNVBRKGN
PBM
Badis et al.(2009)
Zic1_0991
0.827 0.991
ZIC1
M02893_2.00
Homo sapiens
KRCCCCCYGCTGYG

CRCAGCRGGGGGYM
SELEX
Jolma et al.(2013)
ZIC1_1
0.827 0.991
ZIC1
M04485_2.00
Homo sapiens
BVCCMCCYGYHGYGH

DCRCDRCRGGKGGBV
SELEX
Yin et al.(2017)
ZIC1_eDBD_HT-SELEX
0.827 0.991
ZIC1
M04487_2.00
Homo sapiens
BVCCCCCYGCTGYGH

DCRCAGCRGGGGGBV
SELEX
Yin et al.(2017)
ZIC1_FL_HT-SELEX
0.827 0.991
ZIC1
M08900_2.00
Homo sapiens
BMSCHCCCM

KGGGDGSKV
Misc
Kulakovskiy et al.(2013)
ZIC1_HUMAN.H11MO.0.B
0.827 0.991
Zic1
M08990_2.00
Mus musculus
BMSCHCCCM

KGGGDGSKV
Misc
Kulakovskiy et al.(2013)
ZIC1_MOUSE.H11MO.0.B
0.827 0.991
ZIC1
M10226_2.00
Homo sapiens
KRCNMMCYV

BRGKKNGTM
Transfac
Matys et al.(2006)
V$ZIC1_01
0.827 0.991
ZIC1
M10227_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZIC1_Q2
0.827 0.991
ZIC1
M04486_2.00
Homo sapiens
BACCCCCYRCTGTGM

KCACAGYRGGGGGTV
SELEX
Yin et al.(2017)
ZIC1_eDBD_Methyl-HT-SELEX
0.827 0.991
ZIC1
M04488_2.00
Homo sapiens
BRCCCCCTGCTGTGH

DCACAGCAGGGGGYV
SELEX
Yin et al.(2017)
ZIC1_FL_Methyl-HT-SELEX
0.827 0.991
Zic2
M00150_2.00
Mus musculus
NCMYVYNRNN

NNYNRBRKGN
PBM
Badis et al.(2009)
Zic2_2895
0.804 0.964
ZIC2
M08233_2.00
Homo sapiens
BBCCTGCWGNB

VNCWGCAGGVV
ChIP-seq
Najafabadi et al.(2015b)
ZIC2
0.804 0.964
Zic2
M09011_2.00
Mus musculus
NRMYHCCTGCTGDGH

DCHCAGCAGGDRKYN
Misc
Kulakovskiy et al.(2013)
ZIC2_MOUSE.H11MO.0.C
0.804 0.964
ZIC2
M10107_2.00
Homo sapiens
VACCMCCCH

DGGGKGGTB
Transfac
Matys et al.(2006)
V$ZIC2_01
0.804 0.964
ZIC4
M02912_2.00
Homo sapiens
KRCCCCCYGYDGNGH

DCNCHRCRGGGGGYM
SELEX
Jolma et al.(2013)
ZIC4_1
0.801 0.911
ZIC4
M04566_2.00
Homo sapiens
BVCMHCMYRYNRYGH

DCRYNRYRKGDKGBV
SELEX
Yin et al.(2017)
ZIC4_eDBD_HT-SELEX
0.801 0.911
ZIC4
M04567_2.00
Homo sapiens
BRCCHCCYRYBGTKH

DMACVRYRGGDGGYV
SELEX
Yin et al.(2017)
ZIC4_eDBD_Methyl-HT-SELEX
0.801 0.911
Zic3
M00151_2.00
Mus musculus
NCMYVBNRNB

VNYNVBRKGN
PBM
Badis et al.(2009)
Zic3_3119
0.799 0.911
ZIC3
M02894_2.00
Homo sapiens
BACCCCCYGCKGYGH

DCRCMGCRGGGGGTV
SELEX
Jolma et al.(2013)
ZIC3_1
0.799 0.911
Zic3
M02936_2.00
Mus musculus
KRCCCCCYGCTGYGH

DCRCAGCRGGGGGYM
SELEX
Jolma et al.(2013)
Zic3_1
0.799 0.911
ZIC3
M04491_2.00
Homo sapiens
VGACCCCCYGCTGTGM

KCACAGCRGGGGGTCB
SELEX
Yin et al.(2017)
ZIC3_eDBD_HT-SELEX
0.799 0.911
ZIC3
M04493_2.00
Homo sapiens
BACCCCCYGCTGYGH

DCRCAGCRGGGGGTV
SELEX
Yin et al.(2017)
ZIC3_FL_HT-SELEX
0.799 0.911
ZIC3
M08902_2.00
Homo sapiens
NVVYHCCTGCTGDGN

NCHCAGCAGGDRBBN
Misc
Kulakovskiy et al.(2013)
ZIC3_HUMAN.H11MO.0.B
0.799 0.911
Zic3
M09013_2.00
Mus musculus
NVVYHCCTGCTGDGN

NCHCAGCAGGDRBBN
Misc
Kulakovskiy et al.(2013)
ZIC3_MOUSE.H11MO.0.A
0.799 0.911
ZIC3
M10229_2.00
Homo sapiens
VRBCMCCCN

NGGGKGVYB
Transfac
Matys et al.(2006)
V$ZIC3_01
0.799 0.911
Zic3
M10359_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZIC3_07
0.799 0.911
ZIC3
M04492_2.00
Homo sapiens
NKACCCCCTGCTGTGM

KCACAGCAGGGGGTMN
SELEX
Yin et al.(2017)
ZIC3_eDBD_Methyl-HT-SELEX
0.799 0.911
ZIC3
M04494_2.00
Homo sapiens
BRCCCCCTGCTGTGM

KCACAGCAGGGGGYV
SELEX
Yin et al.(2017)
ZIC3_FL_Methyl-HT-SELEX
0.799 0.911
Zic5
M00780_2.00
Mus musculus
BRCCCCCYDS

SHRGGGGGYV
PBM
Weirauch et al.(2013)
pTH2818
0.769 0.884
ZIC5
M04471_2.00
Homo sapiens
NKACCCCCCGCTGHGH

DCDCAGCGGGGGGTMN
SELEX
Yin et al.(2017)
ZIC5_eDBD_HT-SELEX
0.759 0.875
ZIC5
M04472_2.00
Homo sapiens
NKACCCCCYGCTGTGM

KCACAGCRGGGGGTMN
SELEX
Yin et al.(2017)
ZIC5_eDBD_Methyl-HT-SELEX
0.759 0.875
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002937379 C2H2 ZF 236 256
XP_002937379 C2H2 ZF 265 292
XP_002937379 C2H2 ZF 298 322
XP_002937379 C2H2 ZF 328 352
XP_002937379 C2H2 ZF 358 380

Links

Other C2H2 ZF family TFs
Other Xenopus tropicalis TFs

Invalid Input OrderBy

259 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action