XP_002938538 (Xenopus tropicalis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 XP_002938538 T145789_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM16
M10223_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PRDM16_03 		0.824 0.982
PRDM16
M10224_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PRDM16_04 		0.824 0.982
PRDM16
M10225_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PRDM16_05 		0.824 0.982
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002938538 C2H2 ZF 230 251
XP_002938538 C2H2 ZF 278 300
XP_002938538 C2H2 ZF 306 328
XP_002938538 C2H2 ZF 334 357
XP_002938538 C2H2 ZF 363 385
XP_002938538 C2H2 ZF 391 413
XP_002938538 C2H2 ZF 420 441
XP_002938538 C2H2 ZF 946 968
XP_002938538 C2H2 ZF 974 997
XP_002938538 C2H2 ZF 1003 1025

Links

Other C2H2 ZF family TFs
Other Xenopus tropicalis TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSPSIG00000004093 Pelodiscus sinensis ENSPSIG00000004093 I 0.826
PRDM16 Loxodonta africana ENSLAFG00000001071 I 0.826
ENSPPYG00000001968 Pongo abelii ENSPPYG00000001968 I 0.824
PRDM16 Macaca mulatta ENSMMUG00000009350 I 0.824
PRDM16 Meleagris gallopavo ENSMGAG00000001857 I 0.824
Alligator_sinensis_CCG011602.1 Alligator sinensis Alligator_sinensis_CCG011602.1 I 0.824
Gfo_R009744 Geospiza fortis Gfo_R009744 I 0.824
ENSP00000270722 Macaca fascicularis ENSP00000270722 I 0.824
Brh_R007819 Buceros rhinoceros Brh_R007819 I 0.824
Afo_R003306 Aptenodytes forsteri Afo_R003306 I 0.824
PRDM16 Otolemur garnettii ENSOGAG00000005055 I 0.824
PRDM16 Homo sapiens ENSG00000142611 D 0.824
ENSAPLG00000005898 Anas platyrhynchos ENSAPLG00000005898 I 0.824
ENSGALG00000001063 Gallus gallus ENSGALG00000001063 I 0.824
PRDM16 Gorilla gorilla ENSGGOG00000003763 I 0.824
PRDM16 Equus caballus ENSECAG00000017045 I 0.823
PRDM16 Bos taurus ENSBTAG00000018965 I 0.821
ENSP00000417899-D2 Bos grunniens ENSP00000417899-D2 I 0.821
PRDM16 Canis familiaris ENSCAFG00000019473 I 0.816
PRDM16 Sus scrofa ENSSSCG00000021490 I 0.815
ENSLOCG00000005336 Lepisosteus oculatus ENSLOCG00000005336 I 0.812
Ogr15306 Ophisaurus gracilis Ogr15306 I 0.803
Aan_R005955 Calypte anna Aan_R005955 I 0.802
ENSFALG00000009580 Ficedula albicollis ENSFALG00000009580 I 0.802
PRDM16 Danio rerio ENSDARG00000078324 I 0.781
ENSGMOG00000015664 Gadus morhua ENSGMOG00000015664 I 0.780
ENSXMAG00000019072 Xiphophorus maculatus ENSXMAG00000019072 I 0.775
si:ch211-263k4.2 Oryzias latipes ENSORLG00000004492 I 0.775
si:ch211-263k4.2 Gasterosteus aculeatus ENSGACG00000006600 I 0.775
ENSPFOG00000010341 Poecilia formosa ENSPFOG00000010341 I 0.775
ENSAMXG00000014024 Astyanax mexicanus ENSAMXG00000014024 I 0.774
ENSONIG00000002121 Oreochromis niloticus ENSONIG00000002121 I 0.770
si:ch211-263k4.2 Takifugu rubripes ENSTRUG00000014772 N 0.757
si:ch211-263k4.2 Tetraodon nigroviridis ENSTNIG00000011975 N 0.757