CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
16548_YMR037C
(
Saccharomyces mikatae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
16548_YMR037C
T145930_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MSN2
M00036_2.00
Saccharomyces cerevisiae
NVCCCCTK
MAGGGGBN
PBM
Badis et al.(2008)
MSN2_2101
0.827
1.000
MSN2
M07466_2.00
Saccharomyces cerevisiae
CCCCY
RGGGG
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0341.1
0.827
1.000
MSN2
M08538_2.00
Saccharomyces cerevisiae
NHYCCKN
NMGGRDN
Misc
DeBoer et al.(2011)
YMR037C_1380
0.827
1.000
MSN2
M10399_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$MSN2_Q4
0.827
1.000
MSN4
M00032_2.00
Saccharomyces cerevisiae
NYCCCYNN
NNRGGGRN
PBM
Badis et al.(2008)
MSN4_2121
0.781
0.761
MSN4
M07462_2.00
Saccharomyces cerevisiae
CCCCT
AGGGG
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0342.1
0.781
0.761
MSN4
M08533_2.00
Saccharomyces cerevisiae
CCCCT
AGGGG
Misc
DeBoer et al.(2011)
YKL062W_518
0.781
0.761
CAGL0F05995g
M01032_2.00
Candida glabrata
NYCCYYNN
NNRRGGRN
PBM
Siggers et al.(2014)
CAGL0F05995gCgla
0.767
0.848
CaO19.4752
M01035_2.00
Candida albicans
VCCCCYDNNN
NNNHRGGGGB
PBM
Siggers et al.(2014)
Msn4_orf19.4752Calb
0.761
0.761
KLLA0_F26961g
M01039_2.00
Kluyveromyces lactis
CYCCYTD
HARGGRG
PBM
Siggers et al.(2014)
KLLA0F29691gKlac
0.757
0.783
CAGL0M13189g
M01034_2.00
Candida glabrata
MYCCBBDNN
NNHVVGGRK
PBM
Siggers et al.(2014)
CAGL0M13189gCgla
0.757
0.761
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
16548_YMR037C
C2H2 ZF
646
669
FHCHICPKSFKRSEHLKRHVRSVH
16548_YMR037C
C2H2 ZF
675
697
FACHICDKKFSRSDNLSQHIKTH
Links
Other
C2H2 ZF
family TFs
Other
Saccharomyces mikatae
TFs
46 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy