CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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5988_YER028C
(
Saccharomyces mikatae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
5988_YER028C
T145994_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MIG3
M00023_2.00
Saccharomyces cerevisiae
NNCCCCGCAH
DTGCGGGGNN
PBM
Badis et al.(2008)
MIG3_2054
0.786
0.913
MIG3
M01529_2.00
Saccharomyces cerevisiae
CYCCRBNNN
NNNVYGGRG
PBM
Zhu et al.(2009)
Mig3
0.786
0.913
MIG3
M07453_2.00
Saccharomyces cerevisiae
CCCCRCN
NGYGGGG
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0339.1
0.786
0.913
MIG3
M08520_2.00
Saccharomyces cerevisiae
CCCCRCN
NGYGGGG
Misc
DeBoer et al.(2011)
YER028C_501
0.786
0.913
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
5988_YER028C
C2H2 ZF
17
39
FRCEICSRGFHRLEHKKRHVRTH
5988_YER028C
C2H2 ZF
45
69
HKCSFQSCPKSFSRGDELKRHLRTH
Links
Other
C2H2 ZF
family TFs
Other
Saccharomyces mikatae
TFs
11 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CAGL0C02519g
Candida glabrata
CAGL0C02519g
I
0.792
ZYRO0E08426g
Zygosaccharomyces rouxii
ZYRO0E08426g
I
0.791
SKUD_175702
Saccharomyces kudriavzevii
SKUD_175702
I
0.791
KNAG_0B00590
Kazachstania naganishii
KNAG_0B00590
I
0.787
MIG3
Saccharomyces cerevisiae
YER028C
D
0.786
Scas_Contig687.33
Saccharomyces castellii
Scas_Contig687.33
N
0.777
NCAS_0F03740
Naumovozyma castellii
NCAS_0F03740
N
0.777
TBLA_0C04880
Tetrapisispora blattae
TBLA_0C04880
I
0.762
Scas_Contig712.42
Saccharomyces castellii
Scas_Contig712.42
I
0.756
NCAS_0E00610
Naumovozyma castellii
NCAS_0E00610
I
0.756
KAFR_0I02370
Kazachstania africana
KAFR_0I02370
I
0.756