5988_YER028C (Saccharomyces mikatae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 5988_YER028C T145994_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MIG3
M00023_2.00
Saccharomyces cerevisiae
NNCCCCGCAH

DTGCGGGGNN
PBM
Badis et al.(2008)
MIG3_2054
0.786 0.913
MIG3
M01529_2.00
Saccharomyces cerevisiae
CYCCRBNNN

NNNVYGGRG
PBM
Zhu et al.(2009)
Mig3
0.786 0.913
MIG3
M07453_2.00
Saccharomyces cerevisiae
CCCCRCN

NGYGGGG
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0339.1
0.786 0.913
MIG3
M08520_2.00
Saccharomyces cerevisiae
CCCCRCN

NGYGGGG
Misc
DeBoer et al.(2011)
YER028C_501
0.786 0.913
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
5988_YER028C C2H2 ZF 17 39
5988_YER028C C2H2 ZF 45 69

Links

Other C2H2 ZF family TFs
Other Saccharomyces mikatae TFs

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CAGL0C02519g Candida glabrata CAGL0C02519g I 0.792
ZYRO0E08426g Zygosaccharomyces rouxii ZYRO0E08426g I 0.791
SKUD_175702 Saccharomyces kudriavzevii SKUD_175702 I 0.791
KNAG_0B00590 Kazachstania naganishii KNAG_0B00590 I 0.787
MIG3 Saccharomyces cerevisiae YER028C D 0.786
Scas_Contig687.33 Saccharomyces castellii Scas_Contig687.33 N 0.777
NCAS_0F03740 Naumovozyma castellii NCAS_0F03740 N 0.777
TBLA_0C04880 Tetrapisispora blattae TBLA_0C04880 I 0.762
Scas_Contig712.42 Saccharomyces castellii Scas_Contig712.42 I 0.756
NCAS_0E00610 Naumovozyma castellii NCAS_0E00610 I 0.756
KAFR_0I02370 Kazachstania africana KAFR_0I02370 I 0.756