CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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6354_YER028C
(
Saccharomyces bayanus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
6354_YER028C
T145998_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MIG3
M00023_2.00
Saccharomyces cerevisiae
NNCCCCGCAH
DTGCGGGGNN
PBM
Badis et al.(2008)
MIG3_2054
0.768
0.891
MIG3
M01529_2.00
Saccharomyces cerevisiae
CYCCRBNNN
NNNVYGGRG
PBM
Zhu et al.(2009)
Mig3
0.768
0.891
MIG3
M07453_2.00
Saccharomyces cerevisiae
CCCCRCN
NGYGGGG
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0339.1
0.768
0.891
MIG3
M08520_2.00
Saccharomyces cerevisiae
CCCCRCN
NGYGGGG
Misc
DeBoer et al.(2011)
YER028C_501
0.768
0.891
MIG2
M00027_2.00
Saccharomyces cerevisiae
NNCCCCRBNN
NNVYGGGGNN
PBM
Badis et al.(2008)
MIG2_2053
0.763
0.804
MIG2
M01533_2.00
Saccharomyces cerevisiae
NNCCCCRCNN
NNGYGGGGNN
PBM
Zhu et al.(2009)
Mig2
0.763
0.804
MIG2
M07457_2.00
Saccharomyces cerevisiae
CCCCRCN
NGYGGGG
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0338.1
0.763
0.804
MIG2
M08525_2.00
Saccharomyces cerevisiae
CCCCRCN
NGYGGGG
Misc
DeBoer et al.(2011)
YGL209W_523
0.763
0.804
MIG2
M10394_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$MIG2_02
0.763
0.804
cre-1
M01198_2.00
Neurospora crassa
CCCCRNNN
NNNYGGGG
PBM
Lambert et al.(2019)
pTH8711
0.761
0.674
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
6354_YER028C
C2H2 ZF
17
39
FKCEFCSRGFHRLEHKKRHVRTH
6354_YER028C
C2H2 ZF
45
69
HACSFRGCPKSFSRSDELKRHLRTH
Links
Other
C2H2 ZF
family TFs
Other
Saccharomyces bayanus
TFs
189 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy