CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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6484_YER130C
(
Saccharomyces paradoxus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
6484_YER130C
T146000_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
COM2
M00024_2.00
Saccharomyces cerevisiae
VCCCCTDT
AHAGGGGB
PBM
Badis et al.(2008)
YER130C_2103
0.827
1.000
COM2
M01530_2.00
Saccharomyces cerevisiae
YYYYKNWHN
NDWNMRRRR
PBM
Zhu et al.(2009)
Yer130c
0.827
1.000
COM2
M07454_2.00
Saccharomyces cerevisiae
NCCCCTWTH
DAWAGGGGN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0423.1
0.827
1.000
COM2
M08521_2.00
Saccharomyces cerevisiae
NCCCCTWTH
DAWAGGGGN
Misc
DeBoer et al.(2011)
YER130C_534
0.827
1.000
KLLA0_C17072g
M01038_2.00
Kluyveromyces lactis
CYCCTDDNN
NNHHAGGRG
PBM
Siggers et al.(2014)
KLL0C17072gKlac
0.771
0.804
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
6484_YER130C
C2H2 ZF
397
420
FGCEFCDRRFKRQEHLKRHVRSLH
6484_YER130C
C2H2 ZF
426
448
FTCHICNKNFSRSDNLNQHVKTH
Links
Other
C2H2 ZF
family TFs
Other
Saccharomyces paradoxus
TFs
24 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy