CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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estExt_fgenesh1_kg.C_70642
(
Phytophthora capsici
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
estExt_fgenesh1_kg.C_70642
T146142_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Phyra76486
M01182_2.00
Phytophthora ramorum
NRWKCHNN
NNDGMWYN
PBM
Lambert et al.(2019)
pTH11170
0.794
0.868
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh1_kg.C_70642
C2H2 ZF
38
60
FQCGECPRQFSRRYALQEHLATH
estExt_fgenesh1_kg.C_70642
C2H2 ZF
66
90
YVCPARDCGKRFTTTSNLARHRRLH
estExt_fgenesh1_kg.C_70642
C2H2 ZF
97
121
LRCPAAGCTKTFTTSHKLQRHMRVH
estExt_fgenesh1_kg.C_70642
C2H2 ZF
128
152
RCKFANCKKTFSSTGNLNRHMRNQH
Links
Other
C2H2 ZF
family TFs
Other
Phytophthora capsici
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Physo137937
Phytophthora sojae
Physo137937
I
0.794
fgenesh_scip_prom.28083.7632
Phytophthora lateralis
fgenesh_scip_prom.28083.7632
I
0.794
Phyra76486
Phytophthora ramorum
Phyra76486
D
0.794
F443_09524
Phytophthora parasitica
F443_09524
I
0.785
PITG_01387
Phytophthora infestans
PITG_01387
I
0.775
HpaG801423
Hyaloperonospora arabidopsidis
HpaG801423
I
0.772
fgenesh_scip_prom.46568.9158
Phytophthora kernoviae
fgenesh_scip_prom.46568.9158
I
0.772