gw1.8.393.1 (Phytophthora capsici)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 gw1.8.393.1 T146313_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Phyra42912
M01181_2.00 		Phytophthora ramorum
RCSCATCHYN
NRDGATGSGY		 PBM
Lambert et al.(2019)
pTH11167 		0.807 0.942
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
gw1.8.393.1 C2H2 ZF 4 28
gw1.8.393.1 C2H2 ZF 34 58
gw1.8.393.1 C2H2 ZF 64 88

Links

Other C2H2 ZF family TFs
Other Phytophthora capsici TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
maker-pve_contig_642-snap-gene-0.15 Pythium vexans maker-pve_contig_642-snap-gene-0.15 I 0.816
fgenesh1_pg.C_scaffold_2000429 Phytophthora capsici fgenesh1_pg.C_scaffold_2000429 I 0.816
HpaG802957 Hyaloperonospora arabidopsidis HpaG802957 I 0.816
Phyra42912 Phytophthora ramorum Phyra42912 D 0.807
maker-pir_contig_54-snap-gene-0.26 Pythium irregulare maker-pir_contig_54-snap-gene-0.26 I 0.804
maker-pag1_scaffold_440-fgenesh-gene-0.3 Pythium aphanidermatum maker-pag1_scaffold_440-fgenesh-gene-0.3 I 0.804
fgenesh_scip_prom.46568.8091 Phytophthora kernoviae fgenesh_scip_prom.46568.8091 I 0.800
F443_10717 Phytophthora parasitica F443_10717 I 0.795
PITG_10815 Phytophthora infestans PITG_10815 I 0.792
ALNC14_012910 Albugo laibachii ALNC14_012910 I 0.785