LjSGA_004510.1 (Lotus japonicus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 LjSGA_004510.1 T146366_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT3G49930
M06814_2.00
Arabidopsis thaliana
DGATTTC

GAAATCH
Dap-seq
OMalley et al.(2016)
AT3G49930_col_a
0.785 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_004510.1 C2H2 ZF 202 224

Links

Other C2H2 ZF family TFs
Other Lotus japonicus TFs

19 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bostr.6864s0249 Boechera stricta Bostr.6864s0249 I 0.785
AT3G49930 Arabidopsis thaliana AT3G49930 D 0.785
Carubv10017988m.g Capsella rubella Carubv10017988m.g I 0.785
Cagra.4491s0013 Capsella grandiflora Cagra.4491s0013 I 0.785
fgenesh2_kg.5__1344__AT3G49930.1 Arabidopsis lyrata fgenesh2_kg.5__1344__AT3G49930.1 I 0.785
Bo7g099140 Brassica oleracea Bo7g099140 I 0.785
ORUFI08G11110 Oryza rufipogon ORUFI08G11110 I 0.783
BGIOSGA028423 Oryza indica BGIOSGA028423 I 0.783
Sb02g038390 Sorghum bicolor Sb02g038390 N 0.757
ORUFI07G21520 Oryza rufipogon ORUFI07G21520 N 0.757
OS07G0590100 Oryza sativa OS07G0590100 N 0.757
OPUNC07G19500 Oryza punctata OPUNC07G19500 N 0.757
OBART07G20660 Oryza barthii OBART07G20660 N 0.757
LPERR07G17940 Leersia perrieri LPERR07G17940 N 0.757
ORGLA07G0158200 Oryza glaberrima ORGLA07G0158200 N 0.757
OGLUM07G20440 Oryza glumaepatula OGLUM07G20440 N 0.757
OMERI07G17320 Oryza meridionalis OMERI07G17320 N 0.757
ONIVA07G19100 Oryza nivara ONIVA07G19100 N 0.757
Eucgr.B02393 Eucalyptus grandis Eucgr.B02393 N 0.756