CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LjSGA_004510.1
(
Lotus japonicus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
LjSGA_004510.1
T146366_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT3G49930
M06814_2.00
Arabidopsis thaliana
DGATTTC
GAAATCH
Dap-seq
OMalley et al.(2016)
AT3G49930_col_a
0.785
0.696
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
LjSGA_004510.1
C2H2 ZF
202
224
YKCETCDKTFRSYQALGGHRASH
Links
Other
C2H2 ZF
family TFs
Other
Lotus japonicus
TFs
19 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bostr.6864s0249
Boechera stricta
Bostr.6864s0249
I
0.785
AT3G49930
Arabidopsis thaliana
AT3G49930
D
0.785
Carubv10017988m.g
Capsella rubella
Carubv10017988m.g
I
0.785
Cagra.4491s0013
Capsella grandiflora
Cagra.4491s0013
I
0.785
fgenesh2_kg.5__1344__AT3G49930.1
Arabidopsis lyrata
fgenesh2_kg.5__1344__AT3G49930.1
I
0.785
Bo7g099140
Brassica oleracea
Bo7g099140
I
0.785
ORUFI08G11110
Oryza rufipogon
ORUFI08G11110
I
0.783
BGIOSGA028423
Oryza indica
BGIOSGA028423
I
0.783
Sb02g038390
Sorghum bicolor
Sb02g038390
N
0.757
ORUFI07G21520
Oryza rufipogon
ORUFI07G21520
N
0.757
OS07G0590100
Oryza sativa
OS07G0590100
N
0.757
OPUNC07G19500
Oryza punctata
OPUNC07G19500
N
0.757
OBART07G20660
Oryza barthii
OBART07G20660
N
0.757
LPERR07G17940
Leersia perrieri
LPERR07G17940
N
0.757
ORGLA07G0158200
Oryza glaberrima
ORGLA07G0158200
N
0.757
OGLUM07G20440
Oryza glumaepatula
OGLUM07G20440
N
0.757
OMERI07G17320
Oryza meridionalis
OMERI07G17320
N
0.757
ONIVA07G19100
Oryza nivara
ONIVA07G19100
N
0.757
Eucgr.B02393
Eucalyptus grandis
Eucgr.B02393
N
0.756