CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LjSGA_004510.1
(
Lotus japonicus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
LjSGA_004510.1
T146366_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT3G49930
M06814_2.00
Arabidopsis thaliana
DGATTTC
GAAATCH
Dap-seq
OMalley et al.(2016)
AT3G49930_col_a
0.785
0.696
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
LjSGA_004510.1
C2H2 ZF
202
224
YKCETCDKTFRSYQALGGHRASH
Links
Other
C2H2 ZF
family TFs
Other
Lotus japonicus
TFs
19 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy