LjSGA_017927.1 (Lotus japonicus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 LjSGA_017927.1 T146369_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
JKD
M06818_2.00
Arabidopsis thaliana
HHNWWTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAWWNDD
Dap-seq
OMalley et al.(2016)
JKD_col_a
0.764 0.951
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_017927.1 C2H2 ZF 83 104
LjSGA_017927.1 C2H2 ZF 105 129

Links

Other C2H2 ZF family TFs
Other Lotus japonicus TFs

202 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_04344 Aegilops tauschii F775_04344 I 0.786
AMTR_s00002p00270520 Amborella trichopoda AMTR_s00002p00270520 I 0.764
AMTR_s00007p00061550 Amborella trichopoda AMTR_s00007p00061550 I 0.764
Aquca_027_00051 Aquilegia coerulea Aquca_027_00051 I 0.764
Aquca_049_00144 Aquilegia coerulea Aquca_049_00144 I 0.764
scaffold_501386.1 Arabidopsis lyrata scaffold_501386.1 I 0.768
JKD Arabidopsis lyrata fgenesh2_kg.6__219__AT5G03150.1 I 0.764
AtIDD12 Arabidopsis lyrata fgenesh1_pg.C_scaffold_6003159 I 0.797
IDD9 Arabidopsis thaliana AT3G45260 D 0.768
JKD Arabidopsis thaliana AT5G03150 D 0.764
Bostr.2128s0141 Boechera stricta Bostr.2128s0141 I 0.764
Bostr.18473s0395 Boechera stricta Bostr.18473s0395 I 0.768
Bostr.2983s0191 Boechera stricta Bostr.2983s0191 I 0.797
BRADI3G44520 Brachypodium distachyon BRADI3G44520 I 0.786
BRADI5G08537 Brachypodium distachyon BRADI5G08537 I 0.772
BRADI3G26910 Brachypodium distachyon BRADI3G26910 N 0.767
Bo9g183170 Brassica oleracea Bo9g183170 I 0.764
Bo9g021710 Brassica oleracea Bo9g021710 I 0.768
Bo2g167740 Brassica oleracea Bo2g167740 I 0.768
Bo2g100660 Brassica oleracea Bo2g100660 I 0.764
Bo2g003880 Brassica oleracea Bo2g003880 I 0.764
Bo1g065210 Brassica oleracea Bo1g065210 I 0.768
Bo3g129830 Brassica oleracea Bo3g129830 I 0.768
Bra038293 Brassica rapa Bra038293 I 0.792
Bra033840 Brassica rapa Bra033840 I 0.768
Bra018535 Brassica rapa Bra018535 I 0.764
Bra009549 Brassica rapa Bra009549 I 0.764
Bra005741 Brassica rapa Bra005741 I 0.764
PK18288.1 Cannabis sativa PK18288.1 I 0.764
PK25985.1 Cannabis sativa PK25985.1 I 0.797
PK06347.1 Cannabis sativa PK06347.1 I 0.759
Cagra.28200s0002 Capsella grandiflora Cagra.28200s0002 I 0.774
Cagra.1597s0004 Capsella grandiflora Cagra.1597s0004 I 0.764
Cagra.0635s0013 Capsella grandiflora Cagra.0635s0013 I 0.797
Carubv10000736m.g Capsella rubella Carubv10000736m.g I 0.764
Carubv10017213m.g Capsella rubella Carubv10017213m.g I 0.774
Carubv10001008m.g Capsella rubella Carubv10001008m.g I 0.797
evm.TU.supercontig_48.75 Carica papaya evm.TU.supercontig_48.75 I 0.759
evm.TU.supercontig_52.117 Carica papaya evm.TU.supercontig_52.117 I 0.764
evm.TU.supercontig_45.59 Carica papaya evm.TU.supercontig_45.59 I 0.764
Ca_07799 Cicer arietinum Ca_07799 I 0.759
Ca_17124 Cicer arietinum Ca_17124 I 0.764
Ca_14587 Cicer arietinum Ca_14587 I 0.774
Cla018101 Citrullus lanatus Cla018101 I 0.759
Cla015029 Citrullus lanatus Cla015029 I 0.759
Cla005124 Citrullus lanatus Cla005124 I 0.774
Cla018558 Citrullus lanatus Cla018558 I 0.764
Ciclev10028294m.g Citrus clementina Ciclev10028294m.g I 0.774
Ciclev10019959m.g Citrus clementina Ciclev10019959m.g I 0.764
Ciclev10011592m.g Citrus clementina Ciclev10011592m.g I 0.764
Ciclev10007837m.g Citrus clementina Ciclev10007837m.g I 0.767
orange1.1g008017m.g Citrus sinensis orange1.1g008017m.g I 0.767
orange1.1g011807m.g Citrus sinensis orange1.1g011807m.g I 0.764
orange1.1g011334m.g Citrus sinensis orange1.1g011334m.g I 0.764
orange1.1g011146m.g Citrus sinensis orange1.1g011146m.g I 0.774
Cucsa.222420 Cucumis sativus Cucsa.222420 I 0.774
Cucsa.181990 Cucumis sativus Cucsa.181990 I 0.758
Cucsa.306990 Cucumis sativus Cucsa.306990 I 0.759
Cucsa.084240 Cucumis sativus Cucsa.084240 I 0.759
Eucgr.A01159 Eucalyptus grandis Eucgr.A01159 I 0.764
Eucgr.B03566 Eucalyptus grandis Eucgr.B03566 I 0.767
Eucgr.B02487 Eucalyptus grandis Eucgr.B02487 I 0.767
Eucgr.J00939 Eucalyptus grandis Eucgr.J00939 I 0.774
Thhalv10013267m.g Eutrema salsugineum Thhalv10013267m.g I 0.764
Thhalv10016023m.g Eutrema salsugineum Thhalv10016023m.g I 0.768
Thhalv10028701m.g Eutrema salsugineum Thhalv10028701m.g I 0.764
Thhalv10003218m.g Eutrema salsugineum Thhalv10003218m.g I 0.764
Thhalv10002526m.g Eutrema salsugineum Thhalv10002526m.g I 0.768
gene09703-v1.0-hybrid Fragaria vesca gene09703-v1.0-hybrid I 0.764
gene20264-v1.0-hybrid Fragaria vesca gene20264-v1.0-hybrid I 0.759
gene04812-v1.0-hybrid Fragaria vesca gene04812-v1.0-hybrid I 0.774
GLYMA03G31390 Glycine max GLYMA03G31390 I 0.764
GLYMA10G05880 Glycine max GLYMA10G05880 I 0.764
GLYMA12G07510 Glycine max GLYMA12G07510 I 0.768
GLYMA11G15950 Glycine max GLYMA11G15950 I 0.792
GLYMA13G20231 Glycine max GLYMA13G20231 I 0.764
GLYMA19G34220 Glycine max GLYMA19G34220 I 0.763
GLYMA19G36430 Glycine max GLYMA19G36430 I 0.764
GLYMA10G03541 Glycine max GLYMA10G03541 I 0.764
Gorai.009G418600 Gossypium raimondii Gorai.009G418600 I 0.764
Gorai.008G002200 Gossypium raimondii Gorai.008G002200 I 0.764
Gorai.007G139800 Gossypium raimondii Gorai.007G139800 I 0.764
Gorai.006G167600 Gossypium raimondii Gorai.006G167600 I 0.764
Gorai.006G120000 Gossypium raimondii Gorai.006G120000 I 0.774
Gorai.005G198100 Gossypium raimondii Gorai.005G198100 I 0.773
Gorai.004G076800 Gossypium raimondii Gorai.004G076800 I 0.774
Gorai.001G131000 Gossypium raimondii Gorai.001G131000 I 0.774
LPERR02G14730 Leersia perrieri LPERR02G14730 I 0.786
LPERR01G17290 Leersia perrieri LPERR01G17290 I 0.768
Lus10036116.g Linum usitatissimum Lus10036116.g I 0.768
Lus10026497.g Linum usitatissimum Lus10026497.g I 0.764
Lus10007409.g Linum usitatissimum Lus10007409.g I 0.768
Lus10019927.g Linum usitatissimum Lus10019927.g I 0.764
chr1.CM0322.120.nc Lotus japonicus chr1.CM0322.120.nc I 0.764
LjT03L03.50.nd Lotus japonicus LjT03L03.50.nd I 0.764
MDP0000480293 Malus domestica MDP0000480293 I 0.764
MDP0000243664 Malus domestica MDP0000243664 I 0.764
MDP0000688613 Malus domestica MDP0000688613 I 0.764
MDP0000826293 Malus domestica MDP0000826293 I 0.764
MDP0000319344 Malus domestica MDP0000319344 I 0.759
MDP0000122321 Malus domestica MDP0000122321 I 0.764
MDP0000233477 Malus domestica MDP0000233477 I 0.763
cassava24590.valid.m1 Manihot esculenta cassava24590.valid.m1 I 0.764
cassava6007.valid.m1 Manihot esculenta cassava6007.valid.m1 I 0.774
cassava26767.m1 Manihot esculenta cassava26767.m1 I 0.764
cassava21529.m1 Manihot esculenta cassava21529.m1 I 0.773
cassava20362.m1 Manihot esculenta cassava20362.m1 I 0.764
cassava20187.m1 Manihot esculenta cassava20187.m1 I 0.764
cassava832.valid.m1 Manihot esculenta cassava832.valid.m1 I 0.774
MTR_4g059870 Medicago truncatula MTR_4g059870 I 0.774
mgf003691m Mimulus guttatus mgf003691m I 0.764
mgf008439m Mimulus guttatus mgf008439m I 0.759
mgf017113m Mimulus guttatus mgf017113m I 0.758
mgf018401m Mimulus guttatus mgf018401m I 0.758
mgf023281m Mimulus guttatus mgf023281m I 0.764
mgf001929m Mimulus guttatus mgf001929m I 0.768
GSMUA_Achr2G08910_001 Musa acuminata GSMUA_Achr2G08910_001 I 0.788
OBART01G20150 Oryza barthii OBART01G20150 I 0.768
OBART02G18320 Oryza barthii OBART02G18320 I 0.786
OBART01G06050 Oryza barthii OBART01G06050 I 0.759
OB01G16060 Oryza brachyantha OB01G16060 I 0.759
OB02G26130 Oryza brachyantha OB02G26130 I 0.786
OB01G29940 Oryza brachyantha OB01G29940 I 0.759
ORGLA02G0157900 Oryza glaberrima ORGLA02G0157900 I 0.786
ORGLA01G0057600 Oryza glaberrima ORGLA01G0057600 I 0.759
OGLUM01G23770 Oryza glumaepatula OGLUM01G23770 I 0.768
OGLUM02G18620 Oryza glumaepatula OGLUM02G18620 I 0.786
OGLUM01G06620 Oryza glumaepatula OGLUM01G06620 I 0.759
BGIOSGA003803 Oryza indica BGIOSGA003803 I 0.792
BGIOSGA006371 Oryza indica BGIOSGA006371 I 0.786
BGIOSGA002939 Oryza indica BGIOSGA002939 I 0.759
OLONG_013811 Oryza longistaminata OLONG_013811 I 0.786
OMERI10G07530 Oryza meridionalis OMERI10G07530 I 0.761
OMERI01G06230 Oryza meridionalis OMERI01G06230 I 0.759
OMERI01G18610 Oryza meridionalis OMERI01G18610 I 0.768
OMERI02G18510 Oryza meridionalis OMERI02G18510 I 0.786
ONIVA02G20290 Oryza nivara ONIVA02G20290 I 0.786
ONIVA01G22710 Oryza nivara ONIVA01G22710 I 0.768
OPUNC02G16560 Oryza punctata OPUNC02G16560 I 0.786
OPUNC01G20510 Oryza punctata OPUNC01G20510 I 0.768
OPUNC01G05880 Oryza punctata OPUNC01G05880 I 0.759
ORUFI01G22710 Oryza rufipogon ORUFI01G22710 I 0.768
ORUFI02G19290 Oryza rufipogon ORUFI02G19290 I 0.786
OS02G0518500 Oryza sativa OS02G0518500 I 0.786
OS01G0195000 Oryza sativa OS01G0195000 I 0.759
OS01G0572300 Oryza sativa OS01G0572300 I 0.768
Pavir.Ea01893 Panicum virgatum Pavir.Ea01893 I 0.792
Pavir.Aa01904 Panicum virgatum Pavir.Aa01904 I 0.786
Pavir.Ab01787 Panicum virgatum Pavir.Ab01787 I 0.786
POPTR_0001s12770 Populus trichocarpa POPTR_0001s12770 I 0.773
POPTR_0327s00220 Populus trichocarpa POPTR_0327s00220 I 0.773
POPTR_0016s08990 Populus trichocarpa POPTR_0016s08990 I 0.764
POPTR_0002s04880 Populus trichocarpa POPTR_0002s04880 I 0.764
POPTR_0006s13130 Populus trichocarpa POPTR_0006s13130 I 0.764
Pm030100 Prunus mume Pm030100 I 0.759
Pm020252 Prunus mume Pm020252 I 0.759
Pm001002 Prunus mume Pm001002 I 0.764
PRUPE_ppa004548mg Prunus persica PRUPE_ppa004548mg I 0.764
PRUPE_ppa003849mg Prunus persica PRUPE_ppa003849mg I 0.759
PRUPE_ppa005468mg Prunus persica PRUPE_ppa005468mg I 0.759
29643.m000323 Ricinus communis 29643.m000323 I 0.774
29883.m001956 Ricinus communis 29883.m001956 I 0.764
30078.m002347 Ricinus communis 30078.m002347 I 0.764
30128.m008580 Ricinus communis 30128.m008580 I 0.792
SapurV1A.0209s0070 Salix purpurea SapurV1A.0209s0070 I 0.764
SapurV1A.5138s0010 Salix purpurea SapurV1A.5138s0010 I 0.764
SapurV1A.1019s0030 Salix purpurea SapurV1A.1019s0030 I 0.758
SapurV1A.0112s0130 Salix purpurea SapurV1A.0112s0130 I 0.764
SapurV1A.0006s1510 Salix purpurea SapurV1A.0006s1510 I 0.764
SapurV1A.2164s0010 Salix purpurea SapurV1A.2164s0010 I 0.758
Si001504m.g Setaria italica Si001504m.g I 0.768
Si019690m.g Setaria italica Si019690m.g I 0.786
Si001287m.g Setaria italica Si001287m.g I 0.768
Solyc02g062940.2 Solanum lycopersicum Solyc02g062940.2 I 0.763
Solyc04g080130.2 Solanum lycopersicum Solyc04g080130.2 I 0.758
Solyc06g075250.2 Solanum lycopersicum Solyc06g075250.2 I 0.797
Solyc11g069240.1 Solanum lycopersicum Solyc11g069240.1 I 0.774
Solyc09g007550.2 Solanum lycopersicum Solyc09g007550.2 I 0.764
Solyc10g084180.1 Solanum lycopersicum Solyc10g084180.1 I 0.764
PGSC0003DMG400005147 Solanum tuberosum PGSC0003DMG400005147 I 0.758
PGSC0003DMG400008110 Solanum tuberosum PGSC0003DMG400008110 I 0.774
PGSC0003DMG400001747 Solanum tuberosum PGSC0003DMG400001747 I 0.764
PGSC0003DMG400003372 Solanum tuberosum PGSC0003DMG400003372 I 0.797
PGSC0003DMG400015498 Solanum tuberosum PGSC0003DMG400015498 I 0.763
PGSC0003DMG400010478 Solanum tuberosum PGSC0003DMG400010478 I 0.764
Sb04g021440 Sorghum bicolor Sb04g021440 I 0.786
Sb03g025790 Sorghum bicolor Sb03g025790 I 0.768
TCM_041053 Theobroma cacao TCM_041053 I 0.774
TCM_004271 Theobroma cacao TCM_004271 I 0.764
TCM_008261 Theobroma cacao TCM_008261 I 0.773
TCM_022127 Theobroma cacao TCM_022127 I 0.764
Traes_4BL_38E55D7B4 Triticum aestivum Traes_4BL_38E55D7B4 I 0.791
Traes_4DL_DF1F43E16 Triticum aestivum Traes_4DL_DF1F43E16 I 0.786
Traes_4AS_F7A905B43 Triticum aestivum Traes_4AS_F7A905B43 I 0.786
TRIUR3_32694 Triticum urartu TRIUR3_32694 I 0.786
JKD Vitis vinifera VIT_08s0040g02100 I 0.764
VIT_00s0179g00170 Vitis vinifera VIT_00s0179g00170 I 0.764
VIT_06s0004g03070 Vitis vinifera VIT_06s0004g03070 I 0.774
VIT_09s0054g01820 Vitis vinifera VIT_09s0054g01820 I 0.773
GRMZM2G320287 Zea mays GRMZM2G320287 I 0.786
GRMZM2G177693 Zea mays GRMZM2G177693 I 0.768
GRMZM2G027333 Zea mays GRMZM2G027333 I 0.768