XP_002493607.1 (Pichia pastoris)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 XP_002493607.1 T146755_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AZF1
M00039_2.00
Saccharomyces cerevisiae
YNNHNNNNNN

NNNNNNDNNR
PBM
Badis et al.(2008)
AZF1_2102
0.774 0.783
AZF1
M07469_2.00
Saccharomyces cerevisiae
NTTCTTTTN

NAAAAGAAN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0277.1
0.774 0.783
AZF1
M08542_2.00
Saccharomyces cerevisiae
BTTCTTTTB

VAAAAGAAV
Misc
DeBoer et al.(2011)
YOR113W_499
0.774 0.783
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002493607.1 C2H2 ZF 590 612
XP_002493607.1 C2H2 ZF 618 640
XP_002493607.1 C2H2 ZF 646 668
XP_002493607.1 C2H2 ZF 674 699

Links

Other C2H2 ZF family TFs
Other Pichia pastoris TFs

21 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PAS_chr4_0202 Komagataella pastoris PAS_chr4_0202 I 0.827
22792_YOR113W Saccharomyces bayanus 22792_YOR113W I 0.786
AZF1 Saccharomyces cerevisiae YOR113W D 0.774
20760_YOR113W Saccharomyces paradoxus 20760_YOR113W I 0.774
20252_YOR113W Saccharomyces mikatae 20252_YOR113W I 0.774
SU7_3257 Saccharomyces arboricola SU7_3257 I 0.774
ZBAI_09160 Zygosaccharomyces bailii ZBAI_09160 I 0.771
ZBAI_02902 Zygosaccharomyces bailii ZBAI_02902 I 0.771
ZYRO0B16148g Zygosaccharomyces rouxii ZYRO0B16148g I 0.770
Ecym_5424 Eremothecium cymbalariae Ecym_5424 I 0.770
Kpol_1072p58 Vanderwaltozyma polyspora Kpol_1072p58 I 0.766
KLTH0E09724g Kluyveromyces thermotolerans KLTH0E09724g I 0.766
KLTH0E09724g Lachancea thermotolerans KLTH0E09724g I 0.766
Kwal_17888 Kluyveromyces waltii Kwal_17888 I 0.766
KAFR_0C04550 Kazachstania africana KAFR_0C04550 I 0.760
KUCA_T00002085001 Kuraishia capsulata KUCA_T00002085001 N 0.759
TDEL_0B05250 Torulaspora delbrueckii TDEL_0B05250 I 0.759
AACERI_AaceriACR264W Saccharomycetaceae sp ashbya aceri AACERI_AaceriACR264W N 0.758
AGOS_ACR264W Ashbya gossypii AGOS_ACR264W N 0.758
HPODL_02523 Ogataea parapolymorpha HPODL_02523 N 0.757
NDAI_0B04290 Naumovozyma dairenensis NDAI_0B04290 I 0.756