CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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XP_002493607.1
(
Pichia pastoris
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
XP_002493607.1
T146755_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AZF1
M00039_2.00
Saccharomyces cerevisiae
YNNHNNNNNN
NNNNNNDNNR
PBM
Badis et al.(2008)
AZF1_2102
0.774
0.783
AZF1
M07469_2.00
Saccharomyces cerevisiae
NTTCTTTTN
NAAAAGAAN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0277.1
0.774
0.783
AZF1
M08542_2.00
Saccharomyces cerevisiae
BTTCTTTTB
VAAAAGAAV
Misc
DeBoer et al.(2011)
YOR113W_499
0.774
0.783
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
XP_002493607.1
C2H2 ZF
590
612
HECPHCFKKFTQATHLEVHIRSH
XP_002493607.1
C2H2 ZF
618
640
YACEYCGKRFTQGGNLRTHLRLH
XP_002493607.1
C2H2 ZF
646
668
FECNTCHKKFSRKGNLQAHRLTH
XP_002493607.1
C2H2 ZF
674
699
FVCKLDDCNKTFTQLGNLKAHQNRFH
Links
Other
C2H2 ZF
family TFs
Other
Pichia pastoris
TFs
21 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PAS_chr4_0202
Komagataella pastoris
PAS_chr4_0202
I
0.827
22792_YOR113W
Saccharomyces bayanus
22792_YOR113W
I
0.786
AZF1
Saccharomyces cerevisiae
YOR113W
D
0.774
20760_YOR113W
Saccharomyces paradoxus
20760_YOR113W
I
0.774
20252_YOR113W
Saccharomyces mikatae
20252_YOR113W
I
0.774
SU7_3257
Saccharomyces arboricola
SU7_3257
I
0.774
ZBAI_09160
Zygosaccharomyces bailii
ZBAI_09160
I
0.771
ZBAI_02902
Zygosaccharomyces bailii
ZBAI_02902
I
0.771
ZYRO0B16148g
Zygosaccharomyces rouxii
ZYRO0B16148g
I
0.770
Ecym_5424
Eremothecium cymbalariae
Ecym_5424
I
0.770
Kpol_1072p58
Vanderwaltozyma polyspora
Kpol_1072p58
I
0.766
KLTH0E09724g
Kluyveromyces thermotolerans
KLTH0E09724g
I
0.766
KLTH0E09724g
Lachancea thermotolerans
KLTH0E09724g
I
0.766
Kwal_17888
Kluyveromyces waltii
Kwal_17888
I
0.766
KAFR_0C04550
Kazachstania africana
KAFR_0C04550
I
0.760
KUCA_T00002085001
Kuraishia capsulata
KUCA_T00002085001
N
0.759
TDEL_0B05250
Torulaspora delbrueckii
TDEL_0B05250
I
0.759
AACERI_AaceriACR264W
Saccharomycetaceae sp ashbya aceri
AACERI_AaceriACR264W
N
0.758
AGOS_ACR264W
Ashbya gossypii
AGOS_ACR264W
N
0.758
HPODL_02523
Ogataea parapolymorpha
HPODL_02523
N
0.757
NDAI_0B04290
Naumovozyma dairenensis
NDAI_0B04290
I
0.756