XP_002493607.1 (Pichia pastoris)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 XP_002493607.1 T146755_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF1
M00039_2.00 		Saccharomyces cerevisiae
YNNHNNNNNN
NNNNNNDNNR		 PBM
Badis et al.(2008)
AZF1_2102 		0.774 0.783
AZF1
M07469_2.00 		Saccharomyces cerevisiae
NTTCTTTTN
NAAAAGAAN		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0277.1 		0.774 0.783
AZF1
M08542_2.00 		Saccharomyces cerevisiae
BTTCTTTTB
VAAAAGAAV		 Misc
DeBoer et al.(2011)
YOR113W_499 		0.774 0.783
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002493607.1 C2H2 ZF 590 612
XP_002493607.1 C2H2 ZF 618 640
XP_002493607.1 C2H2 ZF 646 668
XP_002493607.1 C2H2 ZF 674 699

Links

Other C2H2 ZF family TFs
Other Pichia pastoris TFs

Invalid Input OrderBy

21 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action