CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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XP_002493607.1
(
Pichia pastoris
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
XP_002493607.1
T146755_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AZF1
M00039_2.00
Saccharomyces cerevisiae
YNNHNNNNNN
NNNNNNDNNR
PBM
Badis et al.(2008)
AZF1_2102
0.774
0.783
AZF1
M07469_2.00
Saccharomyces cerevisiae
NTTCTTTTN
NAAAAGAAN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0277.1
0.774
0.783
AZF1
M08542_2.00
Saccharomyces cerevisiae
BTTCTTTTB
VAAAAGAAV
Misc
DeBoer et al.(2011)
YOR113W_499
0.774
0.783
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
XP_002493607.1
C2H2 ZF
590
612
HECPHCFKKFTQATHLEVHIRSH
XP_002493607.1
C2H2 ZF
618
640
YACEYCGKRFTQGGNLRTHLRLH
XP_002493607.1
C2H2 ZF
646
668
FECNTCHKKFSRKGNLQAHRLTH
XP_002493607.1
C2H2 ZF
674
699
FVCKLDDCNKTFTQLGNLKAHQNRFH
Links
Other
C2H2 ZF
family TFs
Other
Pichia pastoris
TFs
21 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy