XP_002493922.1 (Pichia pastoris)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 XP_002493922.1 T146758_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ADR1
M00021_2.00
Saccharomyces cerevisiae
NACCCCRCHN

NDGYGGGGTN
PBM
Badis et al.(2008)
ADR1_4492
0.766 0.783
ADR1
M07451_2.00
Saccharomyces cerevisiae
NCCCCRM

KYGGGGN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0268.1
0.766 0.783
ADR1
M08517_2.00
Saccharomyces cerevisiae
NCCCCRM

KYGGGGN
Misc
DeBoer et al.(2011)
YDR216W_576
0.766 0.783
ADR1
M10388_2.00
Saccharomyces cerevisiae
MCYCCD

HGGRGK
Transfac
Matys et al.(2006)
F$ADR1_01
0.766 0.783
ADR1
M10389_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ADR1_Q6
0.766 0.783
rst2
M01186_2.00
Schizosaccharomyces pombe
NNCCCCDCNN

NNGHGGGGNN
PBM
Lambert et al.(2019)
pTH11144
0.757 0.783
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002493922.1 C2H2 ZF 40 62
XP_002493922.1 C2H2 ZF 68 91

Links

Other C2H2 ZF family TFs
Other Pichia pastoris TFs

149 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00016p00255950 Amborella trichopoda AMTR_s00016p00255950 N 0.000
Cucsa.160570 Cucumis sativus Cucsa.160570 N 0.000
Cucsa.311930 Cucumis sativus Cucsa.311930 N 0.000
Cucsa.311940 Cucumis sativus Cucsa.311940 N 0.000
Cucsa.311950 Cucumis sativus Cucsa.311950 N 0.000
Cucsa.311960 Cucumis sativus Cucsa.311960 N 0.000
Cucsa.311970 Cucumis sativus Cucsa.311970 N 0.000
Eucgr.F02154 Eucalyptus grandis Eucgr.F02154 N 0.000
evm.TU.supercontig_21.26 Carica papaya evm.TU.supercontig_21.26 N 0.000
SapurV1A.0004s1050 Salix purpurea SapurV1A.0004s1050 N 0.000
PK00855.1 Cannabis sativa PK00855.1 N 0.000
cassava4465.m1 Manihot esculenta cassava4465.m1 N 0.000
cassava31065.valid.m1 Manihot esculenta cassava31065.valid.m1 N 0.000
29908.m006268 Ricinus communis 29908.m006268 N 0.000
GSMUA_Achr6G12970_001 Musa acuminata GSMUA_Achr6G12970_001 N 0.000
GSMUA_Achr8G16170_001 Musa acuminata GSMUA_Achr8G16170_001 N 0.000
PGSC0003DMG400009342 Solanum tuberosum PGSC0003DMG400009342 N 0.000
POPTR_0002s10670 Populus trichocarpa POPTR_0002s10670 N 0.000
PRUPE_ppa1027142mg Prunus persica PRUPE_ppa1027142mg N 0.000
Solyc04g076360.2 Solanum lycopersicum Solyc04g076360.2 N 0.000
Solyc12g087970.1 Solanum lycopersicum Solyc12g087970.1 N 0.000
VIT_18s0001g07620 Vitis vinifera VIT_18s0001g07620 N 0.000
Cla022491 Citrullus lanatus Cla022491 N 0.000
Pm004407 Prunus mume Pm004407 N 0.000
PDK_20s1347151g001 Phoenix dactylifera PDK_20s1347151g001 N 0.000