XP_002493922.1 (Pichia pastoris)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 XP_002493922.1 T146758_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ADR1
M00021_2.00
Saccharomyces cerevisiae
NACCCCRCHN

NDGYGGGGTN
PBM
Badis et al.(2008)
ADR1_4492
0.766 0.783
ADR1
M07451_2.00
Saccharomyces cerevisiae
NCCCCRM

KYGGGGN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0268.1
0.766 0.783
ADR1
M08517_2.00
Saccharomyces cerevisiae
NCCCCRM

KYGGGGN
Misc
DeBoer et al.(2011)
YDR216W_576
0.766 0.783
ADR1
M10388_2.00
Saccharomyces cerevisiae
MCYCCD

HGGRGK
Transfac
Matys et al.(2006)
F$ADR1_01
0.766 0.783
ADR1
M10389_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ADR1_Q6
0.766 0.783
rst2
M01186_2.00
Schizosaccharomyces pombe
NNCCCCDCNN

NNGHGGGGNN
PBM
Lambert et al.(2019)
pTH11144
0.757 0.783
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002493922.1 C2H2 ZF 40 62
XP_002493922.1 C2H2 ZF 68 91

Links

Other C2H2 ZF family TFs
Other Pichia pastoris TFs

149 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29739.m003684 Ricinus communis 29739.m003684 I 0.000
AMTR_s00009p00242790 Amborella trichopoda AMTR_s00009p00242790 I 0.000
BGIOSGA003819 Oryza indica BGIOSGA003819 N 0.000
BGIOSGA003821 Oryza indica BGIOSGA003821 N 0.000
BGIOSGA014565 Oryza indica BGIOSGA014565 N 0.000
BGIOSGA014566 Oryza indica BGIOSGA014566 N 0.000
BGIOSGA014567 Oryza indica BGIOSGA014567 N 0.000
BGIOSGA015472 Oryza indica BGIOSGA015472 N 0.000
cassava8594.m1 Manihot esculenta cassava8594.m1 I 0.000
F775_10624 Aegilops tauschii F775_10624 N 0.000
F775_11347 Aegilops tauschii F775_11347 I 0.000
F775_14190 Aegilops tauschii F775_14190 I 0.000
F775_18830 Aegilops tauschii F775_18830 N 0.000
F775_19744 Aegilops tauschii F775_19744 N 0.000
GLYMA03G30940 Glycine max GLYMA03G30940 I 0.000
Gorai.001G012400 Gossypium raimondii Gorai.001G012400 I 0.000
GRMZM2G172795 Zea mays GRMZM2G172795 I 0.000
GRMZM5G822829 Zea mays GRMZM5G822829 N 0.000
GSMUA_Achr11G21270_001 Musa acuminata GSMUA_Achr11G21270_001 I 0.000
GSMUA_Achr3G10120_001 Musa acuminata GSMUA_Achr3G10120_001 I 0.000
GSMUA_Achr5G20600_001 Musa acuminata GSMUA_Achr5G20600_001 N 0.000
GSMUA_Achr9G18080_001 Musa acuminata GSMUA_Achr9G18080_001 I 0.000
LPERR04G17380 Leersia perrieri LPERR04G17380 N 0.000
LPERR04G17390 Leersia perrieri LPERR04G17390 N 0.000
LPERR04G17400 Leersia perrieri LPERR04G17400 I 0.000
LPERR08G11070 Leersia perrieri LPERR08G11070 N 0.000
MLOC_38470 Hordeum vulgare MLOC_38470 N 0.000
OB01G30110 Oryza brachyantha OB01G30110 N 0.000
OB02G27530 Oryza brachyantha OB02G27530 N 0.000
OB04G28350 Oryza brachyantha OB04G28350 N 0.000
OB04G28380 Oryza brachyantha OB04G28380 N 0.000
OB04G28390 Oryza brachyantha OB04G28390 N 0.000
OBART01G20350 Oryza barthii OBART01G20350 N 0.000
OBART04G21320 Oryza barthii OBART04G21320 N 0.000
OBART04G21370 Oryza barthii OBART04G21370 N 0.000
OGLUM01G23970 Oryza glumaepatula OGLUM01G23970 N 0.000
OGLUM04G21260 Oryza glumaepatula OGLUM04G21260 N 0.000
OGLUM04G21350 Oryza glumaepatula OGLUM04G21350 N 0.000
OLONG_009946 Oryza longistaminata OLONG_009946 N 0.000
OLONG_016958 Oryza longistaminata OLONG_016958 N 0.000
OLONG_016960 Oryza longistaminata OLONG_016960 N 0.000
OMERI01G18770 Oryza meridionalis OMERI01G18770 N 0.000
OMERI01G18860 Oryza meridionalis OMERI01G18860 N 0.000
OMERI04G17790 Oryza meridionalis OMERI04G17790 N 0.000
OMERI04G17820 Oryza meridionalis OMERI04G17820 N 0.000
ONIVA01G22920 Oryza nivara ONIVA01G22920 N 0.000
ONIVA04G19650 Oryza nivara ONIVA04G19650 N 0.000
ONIVA04G19860 Oryza nivara ONIVA04G19860 N 0.000
OPUNC04G19030 Oryza punctata OPUNC04G19030 N 0.000
OPUNC04G19040 Oryza punctata OPUNC04G19040 N 0.000
ORGLA04G0183800 Oryza glaberrima ORGLA04G0183800 N 0.000
ORGLA04G0183900 Oryza glaberrima ORGLA04G0183900 N 0.000
ORGLA11G0077500 Oryza glaberrima ORGLA11G0077500 N 0.000
ORUFI01G23050 Oryza rufipogon ORUFI01G23050 N 0.000
ORUFI04G22890 Oryza rufipogon ORUFI04G22890 N 0.000
ORUFI04G22910 Oryza rufipogon ORUFI04G22910 N 0.000
ORUFI11G09150 Oryza rufipogon ORUFI11G09150 N 0.000
OS04G0557200 Oryza sativa OS04G0557200 N 0.000
OS04G0557800 Oryza sativa OS04G0557800 N 0.000
Pavir.Cb00833 Panicum virgatum Pavir.Cb00833 N 0.000
Pavir.Gb01093 Panicum virgatum Pavir.Gb01093 N 0.000
Pavir.J34298 Panicum virgatum Pavir.J34298 N 0.000
PDK_20s1464821g001 Phoenix dactylifera PDK_20s1464821g001 I 0.000
PGSC0003DMG402030621 Solanum tuberosum PGSC0003DMG402030621 I 0.000
POPTR_0006s13790 Populus trichocarpa POPTR_0006s13790 I 0.000
SapurV1A.0249s0140 Salix purpurea SapurV1A.0249s0140 I 0.000
Sb06g025020 Sorghum bicolor Sb06g025020 N 0.000
Sb06g025040 Sorghum bicolor Sb06g025040 I 0.000
Sb06g025060 Sorghum bicolor Sb06g025060 I 0.000
Si000845m.g Setaria italica Si000845m.g I 0.000
Si012401m.g Setaria italica Si012401m.g I 0.000
TCM_037645 Theobroma cacao TCM_037645 I 0.000
Traes_2AL_4F71A8FB4 Triticum aestivum Traes_2AL_4F71A8FB4 N 0.000
Traes_2DL_099D4CA9B Triticum aestivum Traes_2DL_099D4CA9B N 0.000
TRIUR3_18279 Triticum urartu TRIUR3_18279 N 0.000
TRIUR3_26157 Triticum urartu TRIUR3_26157 N 0.000
TRIUR3_35186 Triticum urartu TRIUR3_35186 N 0.000