CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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BXY_0564300
(
Bursaphelenchus xylophilus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
BXY_0564300
T152455_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
sptf-3
M00632_2.00
Caenorhabditis elegans
NNMCGCCCMY
RKGGGCGKNN
PBM
Narasimhan et al.(2015)
pTH9394
0.767
0.855
Sp4
M01862_2.00
Mus musculus
NMCGCCCMY
RKGGGCGKN
PBM
Weirauch et al.(2014)
pTH4998
0.763
0.783
Sp4
M00133_2.00
Mus musculus
HMCGCCCMYN
NRKGGGCGKD
PBM
Badis et al.(2009)
Sp4_1011
0.763
0.783
Sp4
M05859_2.00
Mus musculus
DGNYMCGCCCHNN
NNDGGGCGKRNCH
SMiLE-seq
Isakova et al.(2017)
SP4
0.763
0.783
Sp4
M08975_2.00
Mus musculus
BYHDKCYCCGCCYYYHBSBB
VVSVDRRRGGCGGRGMHDRV
Misc
Kulakovskiy et al.(2013)
SP4_MOUSE.H11MO.0.B
0.763
0.783
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
BXY_0564300.1
C2H2 ZF
269
291
HVCHICNKTYGKTSHLRAHLRGH
BXY_0564300.1
C2H2 ZF
297
321
FACDWNMCTKKFTRSDELQRHRRTH
BXY_0564300.1
C2H2 ZF
327
349
FVCTQCSKKFMRSDHLSKHIRTH
Links
Other
C2H2 ZF
family TFs
Other
Bursaphelenchus xylophilus
TFs
63 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy