csin109208 (Clonorchis sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 csin109208 T152675_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
opa
M03668_2.00
Drosophila melanogaster
BVCCCCCCRYNGHB

VDCNRYGGGGGGBV
SELEX
Nitta et al.(2015)
opa_1
0.769 0.891
opa
M05861_2.00
Drosophila melanogaster
VCCCCCCRYNGNK

MNCNRYGGGGGGB
SMiLE-seq
Isakova et al.(2017)
Opa
0.769 0.891
opa
M06468_2.00
Drosophila melanogaster
GMCCCCCCGCDG

CHGCGGGGGGKC
B1H
Mathelier et al.(2014)
MA0456.1
0.769 0.891
opa
M06062_2.00
Drosophila melanogaster
GMCCCCCCRCDG

CHGYGGGGGGKC
B1H
Zhu et al.(2011)
opa_NAR_FBgn0003002
0.769 0.891
opa
M06063_2.00
Drosophila melanogaster
MKVMMCCCCMCYR

YRGKGGGGKKBMK
B1H
Zhu et al.(2011)
Opa_SANGER_5_FBgn0003002
0.769 0.891
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
csin109208 C2H2 ZF 358 385
csin109208 C2H2 ZF 391 415
csin109208 C2H2 ZF 421 445
csin109208 C2H2 ZF 451 475

Links

Other C2H2 ZF family TFs
Other Clonorchis sinensis TFs

Invalid Input OrderBy

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action