csin111588 (Clonorchis sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 csin111588 T152708_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
scrt
M03673_2.00
Drosophila melanogaster
RHGCAACAGGTGK

MCACCTGTTGCDY
SELEX
Nitta et al.(2015)
scrt_1
0.780 0.841
scrt
M06085_2.00
Drosophila melanogaster
MCCACCTGTTG

CAACAGGTGGK
B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880
0.780 0.841
scrt
M06086_2.00
Drosophila melanogaster
DNKCAACAGGTGK

MCACCTGTTGMNH
B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880
0.780 0.841
scrt
M06087_2.00
Drosophila melanogaster
VMCACCTGTTGMN

NKCAACAGGTGKB
B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880
0.780 0.841
SCRT1
M02929_2.00
Homo sapiens
RHKCAACAGGTGKNH

DNMCACCTGTTGMDY
SELEX
Jolma et al.(2013)
SCRT1_1
0.763 0.788
SCRT1
M04655_2.00
Homo sapiens
NKCAACAGGTD

HACCTGTTGMN
SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX
0.763 0.788
SCRT1
M08397_2.00
Homo sapiens
RWKCAACAGGTG

CACCTGTTGMWY
ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE
0.763 0.788
SCRT1
M04656_2.00
Homo sapiens
NGCRACAGGTD

HACCTGTYGCN
SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX
0.763 0.788
CG12605
M03691_2.00
Drosophila melanogaster
RHGCAACAGGTGN

NCACCTGTTGCDY
SELEX
Nitta et al.(2015)
CG12605_1
0.759 0.805
CG12605
M06139_2.00
Drosophila melanogaster
CACCTGTKG

CMACAGGTG
B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481
0.759 0.805
CG12605
M06140_2.00
Drosophila melanogaster
MCACCTGTKGVNN

NNBCMACAGGTGK
B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481
0.759 0.805
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
csin111588 C2H2 ZF 438 460
csin111588 C2H2 ZF 470 491
csin111588 C2H2 ZF 495 517
csin111588 C2H2 ZF 523 545
csin111588 C2H2 ZF 551 572

Links

Other C2H2 ZF family TFs
Other Clonorchis sinensis TFs

184 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
T265_09545 Opisthorchis viverrini T265_09545 I 0.827
Sjc_0100840 Schistosoma japonicum Sjc_0100840 I 0.810
TRE_0000944501 Trichobilharzia regenti TRE_0000944501 I 0.810
A_07725 Schistosoma haematobium A_07725 I 0.810
SMTD_0000188801 Schistosoma mattheei SMTD_0000188801 I 0.810
SMRZ_0000904801 Schistosoma margrebowiei SMRZ_0000904801 I 0.810
SCUD_0000371801 Schistosoma curassoni SCUD_0000371801 I 0.810
Smp_054430 Schistosoma mansoni Smp_054430 I 0.810
SMU15013927 Schmidtea mediterranea SMU15013927 I 0.806
D915_06717 Fasciola hepatica D915_06717 I 0.806
ECPE_0000958201 Echinostoma caproni ECPE_0000958201 I 0.806
Ocbimv22039583m.g Octopus bimaculoides Ocbimv22039583m.g I 0.794
CapteG223614 Capitella teleta CapteG223614 I 0.790
PXEA_0002510801 Protopolystoma xenopodis PXEA_0002510801 I 0.787
ALUE_0002049001 Ascaris lumbricoides ALUE_0002049001 I 0.786
TCNE_0000669301 Toxocara canis TCNE_0000669301 I 0.786
CGI_10023711 Crassostrea gigas CGI_10023711 I 0.785
CapteG76620 Capitella teleta CapteG76620 I 0.783
CapteG149623 Capitella teleta CapteG149623 I 0.783
CapteG176021 Capitella teleta CapteG176021 I 0.783
Sakowv30035375m.g Saccoglossus kowalevskii Sakowv30035375m.g I 0.782
GH15771 Drosophila grimshawi FBgn0123242 I 0.780
LCUP005780 Lucilia cuprina LCUP005780 I 0.780
GG15174 Drosophila erecta FBgn0107427 I 0.780
MDOA005810 Musca domestica MDOA005810 I 0.780
PPAI000594 Phlebotomus papatasi PPAI000594 I 0.780
GF25020 Drosophila ananassae FBgn0102012 I 0.780
GM11368 Drosophila sechellia FBgn0166311 I 0.780
GM14603 Drosophila sechellia FBgn0169524 I 0.780
scrt Drosophila melanogaster FBgn0004880 D 0.780
GE21392 Drosophila yakuba FBgn0238652 I 0.780
GK17507 Drosophila willistoni FBgn0219506 I 0.780
GJ16103 Drosophila virilis FBgn0203288 I 0.780
GD13794 Drosophila simulans FBgn0185494 I 0.780
Cflo_09305--XP_001121064.1_APIME Camponotus floridanus Cflo_09305--XP_001121064.1_APIME I 0.780
GI12551 Drosophila mojavensis FBgn0135308 I 0.780
RSKR_0000492900 Rhabditophanes kr3021 RSKR_0000492900 I 0.779
ACUA020861 Anopheles culicifacies ACUA020861 I 0.778
AGAP006794 Anopheles gambiae AGAP006794 I 0.778
AFUN001835 Anopheles funestus AFUN001835 I 0.778
CpipJ_CPIJ004535 Culex pipiens CpipJ_CPIJ004535 I 0.778
AFAF017001 Anopheles farauti AFAF017001 I 0.778
ACUA003488 Anopheles culicifacies ACUA003488 I 0.778
AAEL009230 Aedes aegypti AAEL009230 I 0.778
LLOJ003272 Lutzomyia longipalpis LLOJ003272 I 0.778
AMEC015586 Anopheles melas AMEC015586 I 0.778
AMEM017035 Anopheles merus AMEM017035 I 0.778
AATE010651 Anopheles atroparvus AATE010651 I 0.778
CPIJ004535 Culex quinquefasciatus CPIJ004535 I 0.778
ACOM031677 Anopheles coluzzii ACOM031677 I 0.778
ASTEI08595 Anopheles stephensi ASTEI08595 I 0.778
ASIS012063 Anopheles sinensis ASIS012063 I 0.778
AAEL014359 Aedes aegypti AAEL014359 I 0.778
ENSFALG00000005718 Ficedula albicollis ENSFALG00000005718 I 0.777
SVE_1799900 Strongyloides venezuelensis SVE_1799900 I 0.776
SMUV_0000843501 Syphacia muris SMUV_0000843501 I 0.776
L596_g15116 Steinernema carpocapsae L596_g15116 I 0.776
L892_g9690 Steinernema scapterisci L892_g9690 I 0.776
SPAL_0000842500 Strongyloides papillosus SPAL_0000842500 I 0.776
EVEC_0000710001 Enterobius vermicularis EVEC_0000710001 I 0.776
PTRK_0000719800 Parastrongyloides trichosuri PTRK_0000719800 I 0.776
SSTP_0000144900 Strongyloides stercoralis SSTP_0000144900 I 0.776
SCRT1 Gasterosteus aculeatus ENSGACG00000004072 I 0.775
SCRT1 Takifugu rubripes ENSTRUG00000012719 I 0.775
scrt1b Danio rerio ENSDARG00000040214 I 0.775
ENSAMXG00000004776 Astyanax mexicanus ENSAMXG00000004776 I 0.775
scrt1b Takifugu rubripes ENSTRUG00000011637 I 0.775
ENSXMAG00000015353 Xiphophorus maculatus ENSXMAG00000015353 I 0.775
scrt1a Danio rerio ENSDARG00000100821 I 0.775
ENSXMAG00000014491 Xiphophorus maculatus ENSXMAG00000014491 I 0.775
scrt1b Tetraodon nigroviridis ENSTNIG00000018384 I 0.775
ENSGMOG00000000629 Gadus morhua ENSGMOG00000000629 I 0.775
scrt1b Oryzias latipes ENSORLG00000008641 I 0.775
SCRT2 Meleagris gallopavo ENSMGAG00000016579 I 0.775
ENSLOCG00000007573 Lepisosteus oculatus ENSLOCG00000007573 I 0.775
ENSLACG00000003588 Latimeria chalumnae ENSLACG00000003588 I 0.775
ENSPFOG00000005616 Poecilia formosa ENSPFOG00000005616 I 0.775
ENSONIG00000019809 Oreochromis niloticus ENSONIG00000019809 I 0.775
SCRT2 Taeniopygia guttata ENSTGUG00000006801 I 0.775
SCRT2 Gallus gallus ENSGALG00000028912 I 0.775
ENSPFOG00000017719 Poecilia formosa ENSPFOG00000017719 I 0.775
L889_g21793 Steinernema feltiae L889_g21793 I 0.774
L898_g5709 Steinernema monticolum L898_g5709 I 0.774
SMAR010760 Strigamia maritima SMAR010760 I 0.773
Ogr05737 Ophisaurus gracilis Ogr05737 I 0.773
SCRT2 Anolis carolinensis ENSACAG00000016109 I 0.773
scrt2 Xenopus tropicalis XB-GENE-5995512 I 0.773
D918_03987 Trichuris suis D918_03987 I 0.773
Cmyd_10009565 Chelonia mydas Cmyd_10009565 I 0.773
TMUE_s0027002700 Trichuris muris TMUE_s0027002700 I 0.773
estExt_fgenesh2_pm.C_2290002 Branchiostoma floridae estExt_fgenesh2_pm.C_2290002 I 0.773
ENSONIG00000006007 Oreochromis niloticus ENSONIG00000006007 I 0.773
tetur08g05890 Tetranychus urticae tetur08g05890 I 0.773
TTRE_0000441701 Trichuris trichiura TTRE_0000441701 I 0.773
scrt1b Gasterosteus aculeatus ENSGACG00000008982 I 0.772
DME_0000421901 Dracunculus medinensis DME_0000421901 I 0.772
ENSAPLG00000011730 Anas platyrhynchos ENSAPLG00000011730 I 0.771
SPU_018393 Strongylocentrotus purpuratus SPU_018393 I 0.771
ISCW021315 Ixodes scapularis ISCW021315 I 0.771
D917_06340 Trichinella nativa D917_06340 I 0.769
EFV52761 Trichinella spiralis EFV52761 I 0.769
DAPPUDRAFT_14328 Daphnia pulex DAPPUDRAFT_14328 I 0.769
nRc.2.0.1.g22231 Romanomermis culicivorax nRc.2.0.1.g22231 I 0.769
BGIBMGA000607 Bombyx mori BGIBMGA000607 I 0.768
HHAL001095-PA Halyomorpha halys HHAL001095-PA I 0.768
HHAL001092-PA Halyomorpha halys HHAL001092-PA I 0.768
AMEC013076 Anopheles melas AMEC013076 I 0.768
AQUA003879 Anopheles quadriannulatus AQUA003879 I 0.768
AMEM013788 Anopheles merus AMEM013788 I 0.768
ASIS022059 Anopheles sinensis ASIS022059 I 0.768
AGAP006791 Anopheles gambiae AGAP006791 I 0.768
AAEL005176 Aedes aegypti AAEL005176 I 0.768
CLEC001353 Cimex lectularius CLEC001353 I 0.768
AFUN002786 Anopheles funestus AFUN002786 I 0.768
ACHR010032 Anopheles christyi ACHR010032 I 0.768
ACOM031685 Anopheles coluzzii ACOM031685 I 0.768
ACUA022497 Anopheles culicifacies ACUA022497 I 0.768
AFAF007486 Anopheles farauti AFAF007486 I 0.768
AATE020159 Anopheles atroparvus AATE020159 I 0.768
HMEL014701 Heliconius melpomene HMEL014701 I 0.768
CPIJ017517 Culex quinquefasciatus CPIJ017517 I 0.768
L798_11766 Zootermopsis nevadensis L798_11766 I 0.768
KGM_21493 Danaus plexippus KGM_21493 I 0.768
PHUM474180 Pediculus humanus PHUM474180 I 0.768
MCINX009925 Melitaea cinxia MCINX009925 I 0.768
CpipJ_CPIJ017517 Culex pipiens CpipJ_CPIJ017517 I 0.768
LCUP005777 Lucilia cuprina LCUP005777 I 0.767
LotgiG58520 Lottia gigantea LotgiG58520 I 0.767
scrt2 Tetraodon nigroviridis ENSTNIG00000012473 I 0.765
scrt2 Takifugu rubripes ENSTRUG00000007620 I 0.765
ENSSHAG00000001992 Sarcophilus harrisii ENSSHAG00000001992 I 0.765
ENSGMOG00000019519 Gadus morhua ENSGMOG00000019519 I 0.765
scrt2 Oryzias latipes ENSORLG00000015072 I 0.765
MDOA001622 Musca domestica MDOA001622 I 0.765
ENSPFOG00000007738 Poecilia formosa ENSPFOG00000007738 I 0.765
ENSXMAG00000011590 Xiphophorus maculatus ENSXMAG00000011590 I 0.765
ENSAMXG00000018604 Astyanax mexicanus ENSAMXG00000018604 I 0.765
ENSAMXG00000018733 Astyanax mexicanus ENSAMXG00000018733 I 0.765
L893_g27175 Steinernema glaseri L893_g27175 I 0.765
SCRT1 Otolemur garnettii ENSOGAG00000026538 I 0.763
ENSONIG00000016758 Oreochromis niloticus ENSONIG00000016758 I 0.763
ENSONIG00000003152 Oreochromis niloticus ENSONIG00000003152 I 0.763
ENSOARG00000014008 Ovis aries ENSOARG00000014008 I 0.763
SCRT1 Gorilla gorilla ENSGGOG00000013612 I 0.763
scrt2 Gasterosteus aculeatus ENSGACG00000011802 I 0.763
SCRT1 Loxodonta africana ENSLAFG00000031587 I 0.763
ENSLOCG00000002246 Lepisosteus oculatus ENSLOCG00000002246 I 0.763
Scrt1 Mus musculus ENSMUSG00000048385 I 0.763
ENSPANG00000017232 Papio anubis ENSPANG00000017232 I 0.763
ENSAMEG00000005557 Ailuropoda melanoleuca ENSAMEG00000005557 I 0.763
SCRT1 Homo sapiens ENSG00000261678 D 0.763
SCRT1 Dasypus novemcinctus ENSDNOG00000043826 I 0.763
scrt2 Danio rerio ENSDARG00000056175 I 0.763
ENSCSAG00000008549 Chlorocebus sabaeus ENSCSAG00000008549 I 0.763
ENSCPOG00000024058 Cavia porcellus ENSCPOG00000024058 I 0.763
SCRT1 Callithrix jacchus ENSCJAG00000021406 I 0.763
Scrt1 Rattus norvegicus ENSRNOG00000025594 I 0.763
SCRT1 Bos taurus ENSBTAG00000046208 I 0.763
SCRT1 Sus scrofa ENSSSCG00000025879 I 0.763
ENSSTOG00000023184 Ictidomys tridecemlineatus ENSSTOG00000023184 I 0.763
WUBG_08818 Wuchereria bancrofti WUBG_08818 N 0.762
nAv.1.0.1.g07581 Acanthocheilonema viteae nAv.1.0.1.g07581 N 0.762
nOo.2.0.1.g10180 Onchocerca ochengi nOo.2.0.1.g10180 N 0.762
LOAG_08891 Loa loa LOAG_08891 I 0.762
SCRT1 Macaca mulatta ENSMMUG00000028886 I 0.762
WBGene00237257 Onchocerca volvulus WBGene00237257 N 0.762
Bm4071 Brugia malayi Bm4071 N 0.762
ENSMEUG00000009675 Macropus eugenii ENSMEUG00000009675 I 0.761
SCRT2 Monodelphis domestica ENSMODG00000019528 I 0.761
ACYPI004643 Acyrthosiphon pisum ACYPI004643 I 0.761
Pvit_17685 Pogona vitticeps Pvit_17685 I 0.761
GD13305 Drosophila simulans FBgn0185024 I 0.759
GG14232 Drosophila erecta FBgn0106493 I 0.759
GF24781 Drosophila ananassae FBgn0101774 I 0.759
GA11715 Drosophila pseudoobscura FBgn0071765 I 0.759
CG12605 Drosophila melanogaster FBgn0035481 D 0.759
GM14024 Drosophila sechellia FBgn0168953 I 0.759
GD13304 Drosophila simulans FBgn0185023 I 0.759
GK16692 Drosophila willistoni FBgn0218694 I 0.759
GE20660 Drosophila yakuba FBgn0237965 I 0.759
MESCA005876 Megaselia scalaris MESCA005876 I 0.757
GJ16104 Drosophila virilis FBgn0203289 I 0.757
GI12763 Drosophila mojavensis FBgn0135520 I 0.757
MCOS_0000957301 Mesocestoides corti MCOS_0000957301 N 0.757