CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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csin113630
(
Clonorchis sinensis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
csin113630
T152738_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SP8
M02898_2.00
Homo sapiens
VMCACBCCCMCH
DGKGGGVGTGKB
SELEX
Jolma et al.(2013)
SP8_1
0.760
0.768
SP8
M04517_2.00
Homo sapiens
NMCMCGCCCMYH
DRKGGGCGKGKN
SELEX
Yin et al.(2017)
SP8_eDBD_HT-SELEX
0.760
0.768
SP9
M04645_2.00
Homo sapiens
VMCMCGCCCMYH
DRKGGGCGKGKB
SELEX
Yin et al.(2017)
SP9_eDBD_HT-SELEX
0.760
0.768
SP8
M04518_2.00
Homo sapiens
RHCACGCCCMYH
DRKGGGCGTGDY
SELEX
Yin et al.(2017)
SP8_eDBD_Methyl-HT-SELEX
0.760
0.768
SP9
M04646_2.00
Homo sapiens
RYCACGCCCMYH
DRKGGGCGTGRY
SELEX
Yin et al.(2017)
SP9_eDBD_Methyl-HT-SELEX
0.760
0.768
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
csin113630
C2H2 ZF
574
596
HLCDLCGKTYGKTSHLKAHIRWH
csin113630
C2H2 ZF
602
626
FQCWYNFCSRAFTRSDELQRHIRTH
csin113630
C2H2 ZF
632
654
FFCEQCGKRFMRSDHLSKHRKTH
Links
Other
C2H2 ZF
family TFs
Other
Clonorchis sinensis
TFs
132 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy