CIS-BP Database: Catalog of Inferred Sequence Binding Preferences - Update
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D917_07972
(
Trichinella nativa
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
D917_07972
T152896_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Blimp-1
M03692_2.00
Drosophila melanogaster
NNYACTTTCVYYN
NRRBGAAAGTRNN
SELEX
Nitta et al.(2015)
Blimp-1_1
0.776
0.825
Blimp-1
M06141_2.00
Drosophila melanogaster
ACTTTCACTTTY
RAAAGTGAAAGT
B1H
Zhu et al.(2011)
Blimp-1_NAR_FBgn0035625
0.776
0.825
Blimp-1
M06142_2.00
Drosophila melanogaster
RCTTTCMCTTTY
RAAAGKGAAAGY
B1H
Zhu et al.(2011)
Blimp-1_SANGER_5_FBgn0035625
0.776
0.825
blmp-1
M08103_2.00
Caenorhabditis elegans
YTYTCHYTTTY
RAAARDGARAR
ChIP-seq
Mathelier et al.(2014)
MA0537.1
0.757
0.798
blmp-1
M08195_2.00
Caenorhabditis elegans
VACTTTCDCY
RGHGAAAGTB
ChIP-seq
Contrino et al.(2012)
Mw137
0.757
0.798
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
D917_07972
C2H2 ZF
475
497
YECDQCSKVFGQLSNLKVHMRTH
D917_07972
C2H2 ZF
503
525
FKCNVCGKEFTQLAHLQKHNLVH
D917_07972
C2H2 ZF
531
553
HRCEVCHKRFSSTSNLKTHLRLH
D917_07972
C2H2 ZF
559
581
YACDACPSKFTQFVHLKLHKRLH
D917_07972
C2H2 ZF
587
608
YNCNTCNKKYISPSGLRTHWRT
Links
Other
C2H2 ZF
family TFs
Other
Trichinella nativa
TFs
84 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy