CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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D917_09304
(
Trichinella nativa
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
D917_09304
T152906_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
erm
M03686_2.00
Drosophila melanogaster
TGATTGCTCWTTT
AAAWGAGCAATCA
SELEX
Nitta et al.(2015)
CG31670_1
0.796
0.884
erm
M06128_2.00
Drosophila melanogaster
KWTGYKCWTTT
AAAWGMRCAWM
B1H
Zhu et al.(2011)
CG31670_SANGER_5_FBgn0031375
0.796
0.884
erm
M06129_2.00
Drosophila melanogaster
BBRTTGCTCWTTTBN
NVAAAWGAGCAAYVV
B1H
Zhu et al.(2011)
CG31670_SOLEXA_5_FBgn0031375
0.796
0.884
FEZF1
M08307_2.00
Homo sapiens
NNBTGYYYTTTTNNN
NNNAAAARRRCAVNN
ChIP-seq
Schmitges et al.(2016)
A0PJY2_1-5.RCADE
0.794
0.899
FEZF1
M08889_2.00
Homo sapiens
DYTGYYCWTTTN
NAAAWGRRCARH
Misc
Kulakovskiy et al.(2013)
FEZF1_HUMAN.H11MO.0.C
0.794
0.899
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
D917_09304
C2H2 ZF
94
116
FVCPDCGKVFNAHYNLMRHMPVH
D917_09304
C2H2 ZF
122
144
FVCKMCGKGFRQASTLCRHKIIH
D917_09304
C2H2 ZF
150
172
HKCQTCGKAFNRSSTLNTHARIH
D917_09304
C2H2 ZF
178
200
FVCEFCGKGFHQKGNYKNHKMTH
D917_09304
C2H2 ZF
206
228
FKCHICQKAFHQVYNLTFHMHTH
D917_09304
C2H2 ZF
234
257
FTCHICGKGFCRNFDLKKHLRKLH
Links
Other
C2H2 ZF
family TFs
Other
Trichinella nativa
TFs
160 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy