CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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DME_0000421901
(
Dracunculus medinensis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
DME_0000421901
T153137_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
scrt
M03673_2.00
Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY
SELEX
Nitta et al.(2015)
scrt_1
0.765
0.798
scrt
M06085_2.00
Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK
B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880
0.765
0.798
scrt
M06086_2.00
Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH
B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880
0.765
0.798
scrt
M06087_2.00
Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB
B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880
0.765
0.798
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
DME_0000421901-mRNA-1
C2H2 ZF
87
109
YLCSACGKSYATSSNLSRHKQTH
DME_0000421901-mRNA-1
C2H2 ZF
118
140
KKCHYCGRTYVSMPALSMHLLTH
DME_0000421901-mRNA-1
C2H2 ZF
144
166
HRCEICGKAFSRPWLLQGHMRAH
DME_0000421901-mRNA-1
C2H2 ZF
172
194
YGCAHCGKKFADRSNLRAHMHTH
DME_0000421901-mRNA-1
C2H2 ZF
200
221
YACPACGKHFALKSYLNKHMEL
Links
Other
C2H2 ZF
family TFs
Other
Dracunculus medinensis
TFs
133 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy