GPLIN_000570600 (Globodera pallida)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 GPLIN_000570600 T153567_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
sptf-3
M00632_2.00 		Caenorhabditis elegans
NNMCGCCCMY
RKGGGCGKNN		 PBM
Narasimhan et al.(2015)
pTH9394 		0.784 0.855
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GPLIN_000570600 C2H2 ZF 231 253
GPLIN_000570600 C2H2 ZF 259 283
GPLIN_000570600 C2H2 ZF 289 311

Links

Other C2H2 ZF family TFs
Other Globodera pallida TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HCOI00688600 Haemonchus contortus HCOI00688600 I 0.788
HPBE_0001438901 Heligmosomoides bakeri HPBE_0001438901 I 0.788
ACOC_0001203801 Angiostrongylus costaricensis ACOC_0001203801 I 0.788
DICVIV_09031 Dictyocaulus viviparus DICVIV_09031 I 0.788
ANCDUO_10264 Ancylostoma duodenale ANCDUO_10264 I 0.788
ANCCAN_00594 Ancylostoma caninum ANCCAN_00594 I 0.788
ANCCEY_05940 Ancylostoma ceylanicum ANCCEY_05940 I 0.788
NBR_0001206901 Nippostrongylus brasiliensis NBR_0001206901 I 0.788
HPLM_0000529101 Haemonchus placei HPLM_0000529101 I 0.788
NECAME_13378 Necator americanus NECAME_13378 I 0.788
Bm6499 Brugia malayi Bm6499 I 0.784
nDi.2.2.2.g02202 Dirofilaria immitis nDi.2.2.2.g02202 I 0.784
EEL_0000517301 Elaeophora elaphi EEL_0000517301 I 0.784
BTMF_0000199301 Brugia timori BTMF_0000199301 I 0.784
nLs.2.1.2.g07946 Litomosoides sigmodontis nLs.2.1.2.g07946 I 0.784
nOo.2.0.1.g09582 Onchocerca ochengi nOo.2.0.1.g09582 I 0.784
WBGene00237583 Onchocerca volvulus WBGene00237583 I 0.784
LOAG_01580 Loa loa LOAG_01580 I 0.784
CRE28577 Caenorhabditis remanei CRE28577 I 0.784
nAv.1.0.1.g06936 Acanthocheilonema viteae nAv.1.0.1.g06936 I 0.784
sptf-3 Caenorhabditis elegans WBGene00012735 D 0.784
CBG20386 Caenorhabditis briggsae CBG20386 I 0.784
MhA1_Contig599.frz3.gene7 Meloidogyne hapla MhA1_Contig599.frz3.gene7 I 0.783
SMUV_0000007001 Syphacia muris SMUV_0000007001 I 0.780
ALUE_0000441701 Ascaris lumbricoides ALUE_0000441701 I 0.780
GPUH_0001030801 Gongylonema pulchrum GPUH_0001030801 I 0.780
EVEC_0000041101 Enterobius vermicularis EVEC_0000041101 I 0.780
ASU_13052 Ascaris suum ASU_13052 I 0.780
augustus_masked-nMf.1.1.scaf01525-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf01525-processed-gene-0.0 I 0.774
SBAD_0000755901 Soboliphyme baturini SBAD_0000755901 I 0.773
BGLB011938 Biomphalaria glabrata BGLB011938 I 0.770
DME_0000423301 Dracunculus medinensis DME_0000423301 I 0.768
ASIM_0001129301 Anisakis simplex ASIM_0001129301 I 0.764
Cflo_10237--XP_624316.2_APIME Camponotus floridanus Cflo_10237--XP_624316.2_APIME I 0.763
CGI_10013026 Crassostrea gigas CGI_10013026 I 0.763
SPU_009831 Strongylocentrotus purpuratus SPU_009831 I 0.760
L898_g7955 Steinernema monticolum L898_g7955 I 0.760
SPU_009832 Strongylocentrotus purpuratus SPU_009832 I 0.760
L892_g17070 Steinernema scapterisci L892_g17070 I 0.760
L893_g2044 Steinernema glaseri L893_g2044 I 0.760
L596_g19604 Steinernema carpocapsae L596_g19604 I 0.760
L889_g32073 Steinernema feltiae L889_g32073 I 0.760
AAEL003875 Aedes aegypti AAEL003875 I 0.757
SMAR004952 Strigamia maritima SMAR004952 I 0.757
ADAC004751 Anopheles darlingi ADAC004751 I 0.757
AGAP004438 Anopheles gambiae AGAP004438 I 0.757
CapteG112714 Capitella teleta CapteG112714 I 0.757
CPIJ003609 Culex quinquefasciatus CPIJ003609 I 0.757
ACYPI008586 Acyrthosiphon pisum ACYPI008586 I 0.757
LCUP000151 Lucilia cuprina LCUP000151 I 0.757
AMEM016115 Anopheles merus AMEM016115 I 0.757
AMAM018005 Anopheles maculatus AMAM018005 I 0.757
AQUA008497 Anopheles quadriannulatus AQUA008497 I 0.757
ASIS011603 Anopheles sinensis ASIS011603 I 0.757
CpipJ_CPIJ003609 Culex pipiens CpipJ_CPIJ003609 I 0.757
LLOJ008095 Lutzomyia longipalpis LLOJ008095 I 0.757
AFUN009419 Anopheles funestus AFUN009419 I 0.757
AFAF018385 Anopheles farauti AFAF018385 I 0.757
AALB008691 Anopheles albimanus AALB008691 I 0.757
ASTEI04919 Anopheles stephensi ASTEI04919 I 0.757
AARA006360 Anopheles arabiensis AARA006360 I 0.757
AATE004178 Anopheles atroparvus AATE004178 I 0.757
ACUA022057 Anopheles culicifacies ACUA022057 I 0.757
ACHR002282 Anopheles christyi ACHR002282 I 0.757
CLEC006997 Cimex lectularius CLEC006997 I 0.757