CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GPLIN_001288500
(
Globodera pallida
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
GPLIN_001288500
T153611_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
bcl-11
M00641_2.00
Caenorhabditis elegans
NNTGACCRNN
NNYGGTCANN
PBM
Narasimhan et al.(2015)
pTH10807
0.800
0.897
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GPLIN_001288500
C2H2 ZF
675
697
DRCTYCQKVFTNRSNLIVHLRSH
GPLIN_001288500
C2H2 ZF
703
725
YKCQLCPYACAQSSKLTRHMRTH
GPLIN_001288500
C2H2 ZF
733
754
YNCNICQMPFSVHSTLEKHMRK
Links
Other
C2H2 ZF
family TFs
Other
Globodera pallida
TFs
49 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy