GPUH_0001513701 (Gongylonema pulchrum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 GPUH_0001513701 T153678_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
odd-2
M00618_2.00 		Caenorhabditis elegans
NGCTACYGK
MCRGTAGCN		 PBM
Narasimhan et al.(2015)
pTH9150 		0.767 0.841
Osr2
M00132_2.00 		Mus musculus
NGCTWCYGNN
NNCRGWAGCN		 PBM
Badis et al.(2009)
Osr2_1727 		0.767 0.826
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GPUH_0001513701-mRNA-1 C2H2 ZF 11 33
GPUH_0001513701-mRNA-1 C2H2 ZF 39 61
GPUH_0001513701-mRNA-1 C2H2 ZF 67 89

Links

Other C2H2 ZF family TFs
Other Gongylonema pulchrum TFs

67 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LOAG_00579 Loa loa LOAG_00579 I 0.819
BTMF_0000075201 Brugia timori BTMF_0000075201 I 0.807
Bm9236 Brugia malayi Bm9236 I 0.807
ASU_07002 Ascaris suum ASU_07002 I 0.803
EEL_0000443001 Elaeophora elaphi EEL_0000443001 I 0.803
nOo.2.0.1.g01159 Onchocerca ochengi nOo.2.0.1.g01159 I 0.803
TCNE_0000229401 Toxocara canis TCNE_0000229401 I 0.803
WBGene00239217 Onchocerca volvulus WBGene00239217 I 0.803
nAv.1.0.1.g06169 Acanthocheilonema viteae nAv.1.0.1.g06169 I 0.803
ACOC_0001130401 Angiostrongylus costaricensis ACOC_0001130401 I 0.801
ACAC_0000529401 Angiostrongylus cantonensis ACAC_0000529401 I 0.801
DICVIV_08037 Dictyocaulus viviparus DICVIV_08037 I 0.801
NBR_0000990501 Nippostrongylus brasiliensis NBR_0000990501 I 0.801
nDi.2.2.2.g05871 Dirofilaria immitis nDi.2.2.2.g05871 I 0.800
nLs.2.1.2.g06827 Litomosoides sigmodontis nLs.2.1.2.g06827 I 0.796
ANCCEY_10108 Ancylostoma ceylanicum ANCCEY_10108 I 0.794
ANCCAN_29852 Ancylostoma caninum ANCCAN_29852 I 0.794
ANCDUO_21978 Ancylostoma duodenale ANCDUO_21978 I 0.794
DME_0000745901 Dracunculus medinensis DME_0000745901 I 0.793
NECAME_08408 Necator americanus NECAME_08408 I 0.791
EVEC_0001078501 Enterobius vermicularis EVEC_0001078501 I 0.789
SMUV_0000818001 Syphacia muris SMUV_0000818001 I 0.789
HPLM_0001493201 Haemonchus placei HPLM_0001493201 I 0.787
HCOI00889400 Haemonchus contortus HCOI00889400 I 0.787
scaffold395-EXSNAP2012.4 Pristionchus exspectatus scaffold395-EXSNAP2012.4 I 0.774
Ppa-odd-1 Pristionchus pacificus PPA09938 I 0.774
ENSCING00000006616 Ciona intestinalis ENSCING00000006616 I 0.771
LotgiG130661 Lottia gigantea LotgiG130661 I 0.768
CGI_10012022 Crassostrea gigas CGI_10012022 I 0.768
odd-2 Caenorhabditis elegans WBGene00003846 D 0.767
Ogr10172 Ophisaurus gracilis Ogr10172 I 0.767
osr2.L Xenopus laevis XB-GENE-864802 I 0.767
osr2.S Xenopus laevis XB-GENE-6254720 I 0.767
Gfo_R006005 Geospiza fortis Gfo_R006005 I 0.767
ENSBTAP00000017584-D1 Bos grunniens ENSBTAP00000017584-D1 I 0.767
Alligator_sinensis_CCG020374.1 Alligator sinensis Alligator_sinensis_CCG020374.1 I 0.767
ENSXMAG00000002498 Xiphophorus maculatus ENSXMAG00000002498 I 0.767
OSR2 Homo sapiens ENSG00000164920 D 0.767
ENSFCAG00000014220 Felis catus ENSFCAG00000014220 I 0.767
osr2 Gasterosteus aculeatus ENSGACG00000003524 I 0.767
ENSGMOG00000016368 Gadus morhua ENSGMOG00000016368 I 0.767
ENSLAFG00000009420 Loxodonta africana ENSLAFG00000009420 I 0.767
ENSCSAG00000012312 Chlorocebus sabaeus ENSCSAG00000012312 I 0.767
ENSCPOG00000020572 Cavia porcellus ENSCPOG00000020572 I 0.767
CJA04579 Caenorhabditis japonica CJA04579 I 0.767
CBN15373 Caenorhabditis brenneri CBN15373 I 0.767
ENSACAG00000016280 Anolis carolinensis ENSACAG00000016280 I 0.767
ENSAMXG00000014504 Astyanax mexicanus ENSAMXG00000014504 I 0.767
ENSBTAG00000013213 Bos taurus ENSBTAG00000013213 I 0.767
osr2 Takifugu rubripes ENSTRUG00000011070 I 0.767
ENSLOCG00000009790 Lepisosteus oculatus ENSLOCG00000009790 I 0.767
ENSSHAG00000007793 Sarcophilus harrisii ENSSHAG00000007793 I 0.767
Osr2 Rattus norvegicus ENSRNOG00000011136 I 0.767
OSR2 Sus scrofa ENSSSCG00000006073 I 0.767
ENSSTOG00000021263 Ictidomys tridecemlineatus ENSSTOG00000021263 I 0.767
osr2 Tetraodon nigroviridis ENSTNIG00000013301 I 0.767
ENSTGUG00000012027 Taeniopygia guttata ENSTGUG00000012027 I 0.767
ENSMLUG00000013412 Myotis lucifugus ENSMLUG00000013412 I 0.767
ENSPSIG00000011787 Pelodiscus sinensis ENSPSIG00000011787 I 0.767
ENSMPUG00000015246 Mustela putorius furo ENSMPUG00000015246 I 0.767
Osr2 Mus musculus ENSMUSG00000022330 D 0.767
ENSOCUG00000022383 Oryctolagus cuniculus ENSOCUG00000022383 I 0.767
ENSPFOG00000012273 Poecilia formosa ENSPFOG00000012273 I 0.767
ENSPANG00000012764 Papio anubis ENSPANG00000012764 I 0.767
CBG14844 Caenorhabditis briggsae CBG14844 I 0.764
CRE00192 Caenorhabditis remanei CRE00192 I 0.764
osr2 Danio rerio ENSDARG00000038006 I 0.764